BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477519
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02770.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethy... 998 0.0
AT5G16450.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethy... 582 1e-165
> AT3G02770.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase | chr3:600893-602259 REVERSE
LENGTH=761
Length=761
Score = 998 bits (540), Expect = 0.0
Identities = 662/716 (92%), Gaps = 27/716 (4%)
Strand=Plus/Plus
Query 1 AAACAAGTATGTTGATGACTTTGTTCTCCTTTAAATTATCATCACTCCATTTCTCAGAGA 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 16 AAACAAGTATGTTGATGACTTTGTTCTCCTTTAAATTATCATCACTTCATTTCTCAGAGA 75
Query 61 CTTGCGCACACAGAGTTTTCTCTTCTTTTTTATCATCCGAGTGTTTCTTCTATTTCAGGT 120
|| ||||||||||| |||||||| | || ||| | |||||||||||| |||||
Sbjct 76 TTTACGCACACAGAG--TTCTCTTC-----T-TCGTCCTA--GTTTCTTCTATTCCAGGT 125
Query 121 GAGAACAAAATATGGCGTTTGTGACCACTGCGGAAGTTTGTGACGCGAATCAAGA-ACTG 179
||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 126 GAGAAGAAAAAATGGCGTTTGTGACCACTGCGGAAGTGTGTGACGCGAATCAAGAGA-TG 184
Query 180 ATTCGTAGTGGCCAGCTCCGAGCTCTGCAACCCAATTTCCAGATTTACGGTCGTCGTCAA 239
||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 185 ATTCGAAGTGGCCAGCTCCGAGCTCTGCAACCCGTTTTTCAGATTTATGGTCGTCGTCAA 244
Query 240 ATATTTTCAGGTCCAGTAGTTACTGTCAAAGTATTTGAAGACAATGGCTTAATCCGTCAC 299
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 245 ATATTTTCAGGTCCAGTAGTTACTGTTAAAGTCTTTGAAGACAATGGCTTAATCCGTCAC 304
Query 300 TTCCTCGAAGAAAAAGGGAATGGAAGAGTTCTTGTGGTGGATGGTGGAGGGAGTTTACGC 359
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 305 TTCCTCGAAGAGAAAGGCAATGGTAGAGTTCTTGTGGTGGATGGTGGAGGGAGTTTACGC 364
Query 360 TGTGCGATACTAGGAGGAAACCCGGTAGTACAAGCGCAGAACAACGGATGGGCAGGGATC 419
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 365 TGTGCGATACTAGGAGGAAACCCGGTCGTACAAGCGCAGAACAACGGATGGGCAGGGATC 424
Query 420 ATAGTGAACGGTTGCATCAGAGACGTTGATGAGATCAATGGTTGCGACATTGGAGTGAGA 479
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 ATAGTGAATGGATGCATCAGAGACGTTGATGAGATCAATGGTTGCGACATTGGAGTGAGA 484
Query 480 GCTTTGGCTTCTCATCCAATAAAAGCTAGTAAGAAAGGACTTGGTGAACAAAGAGTCCCT 539
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 485 GCTTTAGCTTCTCATCCAATAAAGGCTAGTAAGAAAGGACTTGGTGAACAAAGAGTCTCT 544
Query 540 TTGAACATAGCAGGCACTCGGATATGCGATGGCGAATGGCTTTATGCAGATACTGATGGT 599
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TTGAACATTGCAGGCACTCGGATATGCGATGGCGAATGGCTTTATGCAGATACTGATGGT 604
Query 600 ATCCTTGTTTCTCAGATTGAATTATCCGTTTAAAAGGACGCAAGTGATGTTG---A---- 652
||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 605 ATCCTTGTTTCTCAGATTGAATTATCCGTTTAAAAGGACACAAGTGATGTTGTTGATTTG 664
Query 653 --A---TCT-TGAAGCTACTACTTTTGTGCTTTGTGTTTTCTGTAATGGCTATCAG 702
| ||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 665 TTAAAATCTGT-AAGCTACTACTTTTGTGCTTTGTGTTT-CTGTAATGGCTATCAG 718
> AT5G16450.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase | chr5:5373883-5375459 FORWARD
LENGTH=847
Length=847
Score = 582 bits (315), Expect = 1e-165
Identities = 442/505 (88%), Gaps = 1/505 (0%)
Strand=Plus/Plus
Query 128 AAATATGGCGTTTGTGACCACTGCGGAAGTTTGTGACGCGAATCAAGAACTGATTCGTAG 187
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 227 AAA-ATGGCGTTTGTGACAACTGCGGAAGTTTGTGACGCGAATCAAGAGCTGATTCGGAG 285
Query 188 TGGCCAGCTCCGAGCTCTGCAACCCAATTTCCAGATTTACGGTCGTCGTCAAATATTTTC 247
||| ||||| |||||| ||||||||| |||||||||||| || ||||| |||||||| ||
Sbjct 286 TGGTCAGCTACGAGCTTTGCAACCCATTTTCCAGATTTATGGCCGTCGACAAATATTCTC 345
Query 248 AGGTCCAGTAGTTACTGTCAAAGTATTTGAAGACAATGGCTTAATCCGTCACTTCCTCGA 307
||| ||||| || ||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 346 AGGACCAGTTGTCACTGTCAAAGTTTTTGAAGACAATGGCTTAATCCGTCAATTCATCGA 405
Query 308 AGAAAAAGGGAATGGAAGAGTTCTTGTGGTGGATGGTGGAGGGAGTTTACGCTGTGCGAT 367
|| ||||| || || |||||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 406 GGAGAAAGGAAACGGTAGAGTTCTTGTGGTGGATGGTGGAGGGAGTCAACGATGTGCAAT 465
Query 368 ACTAGGAGGAAACCCGGTAGTACAAGCGCAGAACAACGGATGGGCAGGGATCATAGTGAA 427
||| ||||| ||||| || || ||||| |||||||||||||||||||| ||| | |||||
Sbjct 466 ACTCGGAGGTAACCCCGTTGTTCAAGCTCAGAACAACGGATGGGCAGGAATCGTTGTGAA 525
Query 428 CGGTTGCATCAGAGACGTTGATGAGATCAATGGTTGCGACATTGGAGTGAGAGCTTTGGC 487
||| |||||||||||||| ||||||||||| ||||| || || |||||||||||||||||
Sbjct 526 CGGATGCATCAGAGACGTCGATGAGATCAACGGTTGTGATATCGGAGTGAGAGCTTTGGC 585
Query 488 TTCTCATCCAATAAAAGCTAGTAAGAAAGGACTTGGTGAACAAAGAGTCCCTTTGAACAT 547
|||||||| |||||||| ||||||||||||||||| |||||| |||| || | || ||
Sbjct 586 CTCTCATCCGATAAAAGCGAGTAAGAAAGGACTTGGAGAACAACGAGTTCCGGTAAATAT 645
Query 548 AGCAGGCACTCGGATATGCGATGGCGAATGGCTTTATGCAGATACTGATGGTATCCTTGT 607
||||| |||||||| || ||||| |||||||||||||||||||||||||| || |||||
Sbjct 646 CGCAGGGACTCGGATTTGTGATGGTGAATGGCTTTATGCAGATACTGATGGGATTCTTGT 705
Query 608 TTCTCAGATTGAATTATCCGTTTAA 632
|| || ||||| ||||||||||||
Sbjct 706 CTCCCAAATTGAGTTATCCGTTTAA 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5