BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477520
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyropho... 1456 0.0
AT5G16440.1 | Symbols: IPP1 | isopentenyl diphosphate isomerase... 869 0.0
> AT3G02780.1 | Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyrophosphate:dimethylallyl
pyrophosphate isomerase 2 | chr3:602433-604684
REVERSE LENGTH=1036
Length=1036
Score = 1456 bits (788), Expect = 0.0
Identities = 866/904 (96%), Gaps = 3/904 (0%)
Strand=Plus/Plus
Query 1 GCATCAGTGATCAGCACATGCGAGACACCAACACCAATGTCTGCTTCTTCTTTATTTAAT 60
|||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GCATCAGTCATCACCACATGCGACACACCAACACCAATGTCTGCTTCTTCTTTATTTAAT 60
Query 61 CTCCCATTGATTCGCCTCAGATCTCTCGCTATTTCG--TT-TTCTTCTTCTTTCCGATTT 117
|||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 61 CTCCCATTGATTCGCCTCAGATCTCTCGCTCTTTCGTCTTCTTTTTCTTCTTTCCGATTT 120
Query 118 TCACATCGTCCTCTGTCATCGATTTCCCCGAGAAAGTTACCGACTTTTCGTGCTTTCTCT 177
| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 121 GCCCATCGTCCTCTGTCATCGATTTCACCGAGAAAGTTACCGAATTTTCGTGCTTTCTCT 180
Query 178 GGTACCGCAATGGCAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATG 237
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTACCGCTATGACAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATG 240
Query 238 TTTGAGGATGAATGCATTCTTGTTGATGAAACTGATCGTGTCCTGGGGCATGACAGCAAA 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 TTTGAGGATGAATGCATTCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAG 300
Query 298 TATAATTGTCATCTGATGGAAAATATTGAAGCTAAGAATTTGCTTCACAGGGCTTTTAGT 357
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 301 TATAATTGTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTAGT 360
Query 358 GTATTTTTATTCAACTCGAAGTATGAGTTACTTCTCCAGCAAAGGTCAAACACAAAGGTT 417
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGCAAAGGTCAAACACAAAGGTT 420
Query 418 ACATTCCCTCTCGTGTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAG 477
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACGTTCCCTCTAGTGTGGACTAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAG 480
Query 478 CTTATCCAAGAAAATGCACTAGGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGACGAG 537
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CTTATCCAGGACAATGCACTAGGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGATGAG 540
Query 538 CTTGGTATTGTAGCTGAAGATGTACCAGTCGATGAGTTCACTGCCTTGGGACGTATGCTA 597
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 CTTGGTATTGTAGCTGAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGTATGCTG 600
Query 598 TACAAGGCTCCTTCTGATGGGAAATGGGGAGAGCACGAACTTGATTACTTGCTCTTCATC 657
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 601 TACAAGGCTCCTTCTGATGGCAAATGGGGAGAGCATGAACTTGATTACTTGCTCTTCATC 660
Query 658 GTGCGGGATGTGAAGGTTCAACCAAACCCGGATGAAGTAGCTGATATCAAGTATGTGAGC 717
||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 661 GTGCGAGACGTGAAGGTTCAACCAAACCCAGATGAAGTAGCTGAGATCAAGTATGTGAGC 720
Query 718 CGGGAAGAGCTGAAGGAGCTGGTGAAGAAAGCAGATGCAGGTGAGGAAGGTTTGAAACTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGGGAAGAGCTGAAGGAGCTGGTGAAGAAAGCAGATGCAGGTGAGGAAGGTTTGAAACTG 780
Query 778 TCACCATGGTTCAGGTTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAG 837
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCACCATGGTTCAGATTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAG 840
Query 838 AAAGGAACTTTGGGTGAAGCTATAGACATGAAAACCATCCACAAGCTCTAAACATCtttt 897
||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 841 AAAGGAACTTTGGTTGAAGCTATAGACATGAAAACCATCCACAAACTCTGAACATCTTTT 900
Query 898 tttA 901
||||
Sbjct 901 TTTA 904
> AT5G16440.1 | Symbols: IPP1 | isopentenyl diphosphate isomerase
1 | chr5:5371627-5373735 FORWARD LENGTH=1174
Length=1174
Score = 869 bits (470), Expect = 0.0
Identities = 624/700 (89%), Gaps = 4/700 (1%)
Strand=Plus/Plus
Query 193 GATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATGTTTGAGGATGAATGC 252
||| |||| |||||||| |||||||||||||||||||| ||||||||||| || ||||||
Sbjct 319 GATTCTAACGATGCTGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAAGACGAATGC 378
Query 253 ATTCTTGTTGATGAAACTGATCGTGTCCTGGGGCATGACAGC-AAATATAATTGTCATCT 311
||||| |||||||||| ||||||||| |||| ||||||| | || ||||| ||||||||
Sbjct 379 ATTCTCGTTGATGAAAATGATCGTGTGGTGGGACATGACA-CTAAGTATAACTGTCATCT 437
Query 312 GATGGAAAATATTGAAGCTAAGAATTTGCTTCACAGGGCTTTTAGTGTATTTTTATTCAA 371
||||||||| ||||||||| ||||||| |||||||| ||||| ||||| |||||||||||
Sbjct 438 GATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTTATTCAA 497
Query 372 CTCGAAGTATGAGTTACTTCTCCAGCAAAGGTCAAACACAAAGGTTACATTCCCTCTCGT 431
||| ||||||||||| |||||||||||| ||||||| ||||||||||| ||||| || ||
Sbjct 498 CTCCAAGTATGAGTTGCTTCTCCAGCAACGGTCAAAAACAAAGGTTACTTTCCCACTTGT 557
Query 432 GTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATCCAAGAAAA 491
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 558 GTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCCGAGCTTATTGAAGAGAA 617
Query 492 TGCACTAGGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGACGAGCTTGGTATTGTAGC 551
|| || ||||| || ||||| |||||||| |||||| |||| ||||| |||||||||||
Sbjct 618 TGTGCTTGGTGTAAGAAATGCCGCACAAAGGAAGCTTTTCGATGAGCTCGGTATTGTAGC 677
Query 552 TGAAGATGTACCAGTCGATGAGTTCACTGCCTTGGGACGTATGCTATACAAGGCTCCTTC 611
||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||||
Sbjct 678 AGAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGCACCTTC 737
Query 612 TGATGGGAAATGGGGAGAGCACGAACTTGATTA-CTTGCTCTTCATCGTGCGGGATGTGA 670
||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||
Sbjct 738 TGATGGGAAATGGGGAGAGCACGAAGTTGACTATCTA-CTCTTCATCGTGCGGGATGTGA 796
Query 671 AGGTTCAACCAAACCCGGATGAAGTAGCTGATATCAAGTATGTGAGCCGGGAAGAGCTGA 730
|| ||||||||||||| |||||||| ||||| |||||||| |||||| |||||||||| |
Sbjct 797 AGCTTCAACCAAACCCAGATGAAGTGGCTGAGATCAAGTACGTGAGCAGGGAAGAGCTTA 856
Query 731 AGGAGCTGGTGAAGAAAGCAGATGCAGGTGAGGAAGGTTTGAAACTGTCACCATGGTTCA 790
||||||||||||||||||||||||| || || |||| | ||||||| || ||||||||||
Sbjct 857 AGGAGCTGGTGAAGAAAGCAGATGCTGGCGATGAAGCTGTGAAACTATCTCCATGGTTCA 916
Query 791 GGTTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTTTGG 850
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 917 GATTGGTGGTGGATAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAACTATCA 976
Query 851 GTGAAGCTATAGACATGAAAACCATCCACAAGCTCTAAAC 890
||||||| ||||||||||||||| |||||||||| |||
Sbjct 977 CTGAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAAC 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44005112772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5