BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477521
Length=538
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02790.1 | Symbols: | zinc finger (C2H2 type) family protei... 760 0.0
AT5G16470.1 | Symbols: | zinc finger (C2H2 type) family protei... 222 2e-57
> AT3G02790.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr3:604845-605421 FORWARD LENGTH=577
Length=577
Score = 760 bits (411), Expect = 0.0
Identities = 458/480 (95%), Gaps = 5/480 (1%)
Strand=Plus/Plus
Query 1 AATTAGGGTTAGGGTTAGGGCTTCTCCCTTCCTGGCAAAATCATCCCTTTGAGCCGCCAT 60
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 17 AATTAGGGTTAGGGTTAGGGCTTCTCCCTTCCTGGCAAATTCATCCCTTTTAGCCGCCAT 76
Query 61 TGAAGATGACTGGTAAGGCGAAGCCAAAGAAGCATACAGCGAAGGAGATTCAAGCGAAGA 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TGAAGATGACTGGTAAGGCCAAGCCAAAGAAGCATACAGCGAAGGAGATTCAAGCGAAGA 136
Query 121 TCGATGCTGCGTTGACTAATCGCGGCGGAGGAAAAGCTGGAATCGCTGATCGGACCGGAA 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 137 TCGATGCTGCGTTGACTAATCGAGGCGGAGGAAAAGCTGGAATCGCTGATCGGACCGGAA 196
Query 181 AAGAGAAAGGAGGTCACGCTAAGTACGAGTGTCCACATTGCAAAATCACGGCACC-GGAT 239
||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || |
Sbjct 197 AAGAGAAAGGAGGCCACGCTAAGTACGAGTGTCCTCATTGCAAAATTACGGCTCCAGG-T 255
Query 240 CTAAAGACGATGCAGATCCATCACGAATCCAAGCATCCTAAGATCATTTATGAGGAATCA 299
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 256 CTTAAGACGATGCAGATCCATCACGAATCGAAGCATCCTAATATCATTTATGAGGAATCA 315
Query 300 AAGCTCGTGAATCTCCATGCTGTTTTAGCACCAGTAGCTGAATCGAAACCTAAACCTGGT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 AAGCTCGTGAATCTCCATGCTGTTTTAGCACCAGTAGCTGAATCGAAACCTAAACCTGGT 375
Query 360 ATCAGGGGAAGCTTGAAGAAGTAACTCTATGTTTCGA-TTTTATCAAAATTTGTTATCTT 418
|||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||
Sbjct 376 ATCAGGGGAAGCTTGAAGAAGTAACTCTATGTTT-GAATTTTAT-AAAATTTGTTATCTT 433
Query 419 TTGATTTTGAAGATTGTAATGTGCTACTTTTTACCCCCAAATCTATCATGTAGTTGATGT 478
||||| || |||| ||||||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct 434 TTGATGTTAAAGAGTGTAATGTGCTACTTCTTACCCCAAAATCTATCATGTTGTTGATGT 493
> AT5G16470.1 | Symbols: | zinc finger (C2H2 type) family protein
| chr5:5379416-5380040 FORWARD LENGTH=625
Length=625
Score = 222 bits (120), Expect = 2e-57
Identities = 193/229 (84%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 65 GATGACTGGTAAGGCGAAGCCAAAGAAGCATACAGCGAAGGAGATTCAAGC-GAAGATCG 123
|||||| || || || |||||||||||||| |||||||||||| | ||||| ||| ||
Sbjct 100 GATGACAGGCAAAGCAAAGCCAAAGAAGCACACAGCGAAGGAGCTCCAAGCTAAAG-CCG 158
Query 124 ATGCTGCGTTGACTAATCGCGGCGGAGGAAAAGCTGGAATCGCTGATCGGACCGGAAAAG 183
|||| |||||||| |||||||| |||||||| || || |||| ||| | ||||| || |
Sbjct 159 ATGCAGCGTTGACCAATCGCGGTGGAGGAAAGGCAGGGCTCGCCGATAGAACCGGTAAGG 218
Query 184 AGAAAGGAGGTCACGCTAAGTACGAGTGTCCACATTGCAAAATCACGGCACCGGATCTAA 243
||||||| |||||||| |||||||||||||| || ||||| ||||| | |||||||||||
Sbjct 219 AGAAAGGTGGTCACGCAAAGTACGAGTGTCCTCACTGCAAGATCACTGTACCGGATCTAA 278
Query 244 AGACGATGCAGATCCATCACGAATCCAAGCATCCTAAGATCATTTATGA 292
||||||||||||||||||| ||||| |||||||| ||| | | ||||||
Sbjct 279 AGACGATGCAGATCCATCATGAATCGAAGCATCCAAAGCTGACTTATGA 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25770117411
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5