BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477523
Length=2032
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02810.1 | Symbols: | Protein kinase superfamily protein | ... 2543 0.0
> AT3G02810.1 | Symbols: | Protein kinase superfamily protein
| chr3:608460-610985 REVERSE LENGTH=2146
Length=2146
Score = 2543 bits (1377), Expect = 0.0
Identities = 1637/1759 (93%), Gaps = 32/1759 (2%)
Strand=Plus/Plus
Query 117 CATCATCATGCACTGTTTTCCGTGTTTCTCCTCGCCAAAGAACAAGAAATCTTCAACTAC 176
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 194 CATCATCATGCACTGTTTTCCGTGTTTCTCTTCGCCAAAGAACAAGAAATCTTCAACTAC 253
Query 177 GAATGAAACTAACGACAACAACGAACCCAGACCACCTGATAGGAGACGTACAGAAGAAAC 236
|||||| || ||||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct 254 GAATGAGACCAACGACAACAACGAACCCAAACCAGATGATAGGAGACGTGCAGAAGAAAC 313
Query 237 AGAGGAAACAGAGCAATCAGAAGGAACATCGTTAAAGATATTCACTTTCCGGGAATTAGC 296
|||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 314 AGAGGAAATAGAGCAATCGGAAGGAACATCGTTGAAGATATTCACTTTCCGGGAATTAGC 373
Query 297 AACGGCCACAAAGAATTTCAGGCAAGAATGTTTGCTAGGAGAAGGTGGATTTGGTAGAGT 356
|| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 374 TACAGCCACAAAGAATTTCCGGCAAGAGTGTTTGCTAGGAGAAGGTGGATTTGGTAGGGT 433
Query 357 TTACAAAGGAACCCTTAAATCTACTGGCCAGGTGGTGGCTGTAAAGCAACTAGACAAGCA 416
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TTACAAAGGAACCCTCAAATCTACTGGCCAGGTGGTGGCTGTAAAGCAACTAGACAAGCA 493
Query 417 TGGATTACATGGGAACAAAGAGTTTCAAGCTGAGGTTTTGTCTTTAGGCCAACTCGATCA 476
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 494 TGGATTACATGGAAACAAAGAGTTTCAAGCTGAGGTTTTGTCTTTAGGCCAACTTGATCA 553
Query 477 TCCGAATCTTGTTAAGCTTATTGGGTACTGCGCAGATGGAGATCAAAGGCTTTTGGTCTA 536
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 554 TCCGAATCTTGTTAAGCTTATTGGTTACTGCGCGGATGGAGATCAAAGGCTTTTGGTCTA 613
Query 537 TGATTATATCTCTGGAGGTTCACTTCAAGACCATCTTCACGAACCAAAACCAGACTGTGA 596
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 614 TGATTATATCTCTGGAGGTTCACTTCAAGACCATCTTCATGAACCAAAAGCAGACAGTGA 673
Query 597 ACCGATGGATTGGACAACGAGGATGCAGATAGCGTATGGC-GCAGCGCAAGGACTTTATT 655
||||||||||||||||| |||||||||||||||||| || ||||||||||| ||| |||
Sbjct 674 TCCGATGGATTGGACAACTAGGATGCAGATAGCGTAT-GCTGCAGCGCAAGGGCTTGATT 732
Query 656 ACTTGCACGATAAAGCGAATCCACCTGTGATATACAGAGATTTAAAAGCTTCAAACATTT 715
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 733 ACTTGCACGATAAAGCGAATCCACCCGTGATATACAGAGATTTGAAAGCTTCAAACATTT 792
Query 716 TGTTAGATTATGACTTTTCTCCAAAGCTTTCTGACTTTGGTCTGCATAAGCTAGGACCAG 775
|||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct 793 TGTTAGATGATGACTTTTCTCCTAAGCTTTCTGATTTTGGTCTACATAAGCTAGGACCCG 852
Query 776 GAACAGGTGATAAGATGATGGCTCTATCTTCACGAGTAATGGGAACTTATGGTTACTCTG 835
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 853 GGACAGGTGATAAGATGATGGCTTTATCTTCACGAGTAATGGGAACTTATGGTTACTCTG 912
Query 836 CTCCTGAGTATACGCGAGGAGGAAATCTCACGTTGAAGTCAGATGTCTACAGCTTTGGTG 895
| ||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 913 CACCTGAGTATACACGAGGCGGAAATCTCACTTTGAAATCAGATGTCTATAGCTTTGGTG 972
Query 896 TTGTGTTGCTTGAGCTCATCACGGGTCGAAGAGCTCTTGATACTACTAGGCCTAATGATG 955
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TTGTGTTGCTTGAGCTTATCACGGGTCGAAGAGCTCTTGATACTACTAGGCCTAATGATG 1032
Query 956 AACAGAACTTAGTTTCTTGGGCACAACCGATATTTAGAGATCCTAAGAAGTATCCGGATA 1015
||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct 1033 AACAGAACTTAGTTTCTTGGGCACAACCGATATTTAGAGATCCGAAGAGGTATCCCGATA 1092
Query 1016 TGGCAGATCCAGTTCTGAATAATAAATTCTCAGAGAGAGGATTAAACCAAGCAGTGGCAA 1075
|||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TGGCAGATCCAGTTTTGGAGAATAAATTCTCAGAGAGAGGATTAAACCAAGCAGTGGCAA 1152
Query 1076 TAGCGTCAATGTGTGTGCAAGAGGAGGCAGCAGCTCGTCCTCTGATAAGCGATGTAATGG 1135
|||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct 1153 TAGCTTCAATGTGTGTGCAAGAGGAAGCATCAGCTCGTCCTCTTATAAGCGATGTAATGG 1212
Query 1136 TTGCGCTTAGCTTCCTTTCGATGCCTACAGAAGACGGTATTCCCACAGCAGTTCCTATCC 1195
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1213 TTGCGCTTAGCTTCCTTTCGATGCCTACAGAAGATGGTATTCCCACAACAGTTCCTATCT 1272
Query 1196 TATCTTTCAAGGACAAGAGCATGTCTATAGCCTTAAGCCGGCATGATTCAAATCTTGTAT 1255
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1273 TATCCTTCAAAGACAAGAGCATGTCTATAGCCTTAAGCCGACATGATTCAAATCTTGTAT 1332
Query 1256 CTCCTCCTCCTGAGCTAGCTACGGAAGATGACAAATCTAGTACATCATCAGGCGAAGAAT 1315
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1333 CTCCTCCTCCTGAGCTAGCTACGGAAGATGACAAATCTAGTACCTCATCAGGCGAAGAAT 1392
Query 1316 CATCTTTGGACAGTGAAAATGAGAATGTGAGTAAGAA-GAAGTATAAGAA-A--CATGAA 1371
|||||||||| || ||||| |||| |||||||||||| || ||||||||| | ||||||
Sbjct 1393 CATCTTTGGAGAGCGAAAAGGAGAGTGTGAGTAAGAATGA-GTATAAGAAGAAACATGAA 1451
Query 1372 GAGGAAGATAGCTCAATGGAATCTGATGATGGGTCTGATTCAAACTCTGAACATGAAAAA 1431
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1452 GAGGAAGATAGCTCAATGGAATCTGATGATGAGTCTGATTCTAACTCTGAACATGAAAAG 1511
Query 1432 GACCAAGATAGTCCACCACCAAAGCCTATTGATGAGAAGAACCAGGCGCAAAGCTTGAAG 1491
|||||| |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1512 GACCAA------CCACCA--AA-GCCTATTGATGAGAAGAACCAGGCGCAAAGCTTGAAG 1562
Query 1492 ATAAAGTATAGATATAGCTGGGAAGATATAGATGTCGGTGATGAGAGGCTAAGCAGTAAA 1551
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1563 ATAAAGTATAGATATAGCTGGGAAGATATTGATGTCAATGATGAGAGGCTAAGCAGTAAA 1622
Query 1552 AGCAGCCAGAAATCAGATGACGAAAGCACTTCTTCGCGCTATGATAGCGACagagaccag 1611
|||||||| |||||| | |||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1623 AGCAGCCAAAAATCAAACGACGAAAGTACTTCTTCGCGTTATGATAGCGACAGAGATCAA 1682
Query 1612 gaggagaaagagaaagaaga-g-g-a-g-g-aagagg-a-a-ga---gCATACTCATATT 1659
|| ||||||| ||||||||| | | | | | |||||| | | || |||||||||||||
Sbjct 1683 GACGAGAAAGGGAAAGAAGAAGAGGAAGAGGAAGAGGCAGAAGAAAAGCATACTCATATT 1742
Query 1660 GAACACATTGATAGCTCAAAAACTGATGATGATCAAAGTGTTTACTTTGATAATGATGAT 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 GAACACATTGATAGCTCAAAAACTGATGATGATCAAAGTGTTTACTTTGATAATGATGAT 1802
Query 1720 GATTCAGGAGATGACAATGGAGCCTCTTTGCATCGGATAAAATCAGAGGTTGAGATTGAT 1779
|||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| |||
Sbjct 1803 GATTCAGGAGATGACAATGGAGGCTCTTTGCATCGGATAAAATCAGATGTTGCGATCGAT 1862
Query 1780 TCTATTAAAGAGTGAC-TTTTTCAAGATTTTA-ATCCATCCACTGAAGCTCACAAAAAG- 1836
|||||||||||||||| |||||||||||||| ||| |||| |||||||||||| |||
Sbjct 1863 TCTATTAAAGAGTGACATTTTTCAAGATTTTTTATCAATCCGTTGAAGCTCACAAGAAGT 1922
Query 1837 AGTTTGAATCATTTTTGGG 1855
| |||||| | ||||||||
Sbjct 1923 A-TTTGAAACTTTTTTGGG 1940
Score = 246 bits (133), Expect = 5e-64
Identities = 165/180 (92%), Gaps = 4/180 (2%)
Strand=Plus/Plus
Query 1854 GGGTATTACTATAAGATACATATTGATGTTTTTTCTTAACAAATTATAACCATCTCTCTT 1913
|||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1967 GGGTATTAAAATAAGATACATATTGACGGTTTTTCTTAACAAATTATAACCATCTCTCTT 2026
Query 1914 TATGGCATGATGAAGATGTTTTGGATTGGTAGAT-AATTAAAGAAACAAGCTGTATAAAT 1972
||| ||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||| |
Sbjct 2027 TATA-CATGATGAAGATGTTTTGGATTGATAGATTAAT-AAAGAAACAAGTTGTATAA-T 2083
Query 1973 CAGATGATCTGATTGAGAAAACTCATCTCAGGTTTTGTAATCCTTTGaaaaaaaaTGTTA 2032
||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 2084 CAGATAATCTGATTGAGAAAACTTATCTCAGCTTTTGTAATCCTTTAAAAAAAAATGTTA 2143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100702293270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5