BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477526
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02840.1 | Symbols: | ARM repeat superfamily protein | chr3... 1890 0.0
> AT3G02840.1 | Symbols: | ARM repeat superfamily protein | chr3:618409-619686
FORWARD LENGTH=1278
Length=1278
Score = 1890 bits (1023), Expect = 0.0
Identities = 1201/1284 (94%), Gaps = 23/1284 (2%)
Strand=Plus/Plus
Query 1 ATCGAATAATCGAAAAATATTTGAATTTTCTTAGGaaaccaaaccaa-aaaacaaaaagg 59
|||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1 ATCGAATAGTCGAAAAATATTTGAACTTTCTTAGGAAACCAAACCAACAAAACAAAAAGG 60
Query 60 aaaacgaaaTAATGGTGTTACCTTGGAGATCAAGAGGAGGAGTAGCAAAGAGACGCAATC 119
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AAAACGAGATAATGGTGTTACCTTGGAGATCAAGAGGAGGAGTAGCAAAGAGACGTAATC 120
Query 120 AATTGATTGCCGGCGATATCTCCGTCGTGGAAACCAAGATTCCGGTTCAACTCCGAT--- 176
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 AATTGATTTCCGGCGATATCTCCGTCGTGGAAACCAAGATTCCAGTTCAACTCCGATCGC 180
Query 177 CATCAAGGATGGAGCGGATTCAGTCACCGCGGGTGCTGTTGGCGCCGTATGATGCCGTTG 236
|||||||||| |||||||||||||||||||| ||||||||| ||||| |||||| || |
Sbjct 181 CATCAAGGATAGAGCGGATTCAGTCACCGCGCGTGCTGTTGACGCCGCGTGATGCGGTGG 240
Query 237 AGATAAGTCGGAGATTGGAAAATGCGGCGGCGCGTGAGGAATATGCCGAGTGTTTCGAGA 296
||||||||||||||||| |||| || |||||||||||||| |||||||||||||| ||||
Sbjct 241 AGATAAGTCGGAGATTGCAAAACGCAGCGGCGCGTGAGGAGTATGCCGAGTGTTTGGAGA 300
Query 297 TTGTGACCAAAATCAAGAACTTGGGAAGAGAAGGAGGGGACACGAACAAGAAGTGTTTGG 356
|||||| |||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 301 TTGTGAGCAAAATCAAGAACTTGGG-A-AG-AGGAGGGGACACGAACAAGAAGTGTTTGG 357
Query 357 TCCAAAACGGCGGAGTTTTAGCTTTGTCTTCTTGTTTCGAAAGATTCGCGGCGGCGCGTG 416
|||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 358 TCCAAAACGGAAGCGTTTTGGCTTTGTCTTCTTGTTTTGAAAGATTCGCGGCGGCGCGTG 417
Query 417 AGGGACACGA-GCGTCTT-TTGGAGGAAATCTTGTTTGTTCTATCTTCATGGTTGCCTCT 474
| |||||| | |||| || |||||||||||||||||||||||||| || |||||||||||
Sbjct 418 ATGGACAC-ATGCGT-TTATTGGAGGAAATCTTGTTTGTTCTATCATCTTGGTTGCCTCT 475
Query 475 GAATCGATCAGAAGGTTTCAACAAGATGGGATCAACAGCTTCGCTTAACTGTCTCGTACG 534
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 476 GAATCGATCAGAAGGTTTCAACAAGATGGGATCAACGGCTTCTCTTAACTGTCTCGTACG 535
Query 535 GTTCTTGAACGGTAAGGACGCTAAAACGAGACAAAACGCTGCTTTTTGTATCAGAGAGGT 594
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 536 GTTCTTGAACGGTAAGGACGCTAAAACGAGACAAAACGCTGCGTTTTGCATCAGAGAGGT 595
Query 595 TATTGCAGTAGACAAGAGGTACGTGTATGCGTTAACAGATATGGAAGGAGCTTGTGAAGG 654
||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 596 TATTGCAGTAGACAAGAGGTATGTGTACGCGTTAACAGATGTGGAAGGAGCTTGTGAAGG 655
Query 655 ATTAGTTAAGATCATCAGAGACTCTGTTTCGACTAGCTCGGCGAAAGCATCGCTAATGGT 714
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 656 ATTAGTTAAGATCATCAGAGACTCTGTTTCGACTAGCTCCACGAAAGCATCTTTAATGGT 715
Query 715 GATTTATAGAGCGATTTCTTGTAACGACCAGATCGCTGCAAGATTTGTGAGACTGGGTTT 774
|||||||||||||||||||| ||||||| ||||| ||| || |||||||| |||||||||
Sbjct 716 GATTTATAGAGCGATTTCTTCTAACGACAAGATCACTGAAAAATTTGTGAAACTGGGTTT 775
Query 775 GGTTGAAG-TGATCACAGAGATGATGGTGAACAATGCCGAAAAGAGCGTTTGCGAGAGAT 833
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GGTTG-AGTTGATCACAGAGATGATGGTGAACAATGCCGAAAAGAGCGTTTGCGAGAGAT 834
Query 834 CTCTAGTTGTTCTTAA-CGCTATATGCGATAACGAGCAAGGCAAAGAAGATGTTCTTAGA 892
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 835 CTCTAGTTGTT-TTAAACGCTACATGCGATAACGAGCAAGGCAAAGAAGATGTTCTTAGA 893
Query 893 AACGCTTTGATCGTTCCTCTTCTAGTTAAGAAGGTTCTTAGAGTTTCGGATCTCGCGACA 952
||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 894 AACGCTTTGATCGTTCCTCTTCTGGTGAAGAAGATTCTTAGAGTTTCGGATCTCGCGACA 953
Query 953 CAATGTTCGGTCTCGATTCTTTGGAAGCTATGGAAGAATAATG---GA---A-AATCTGA 1005
||||||||||| ||||| ||||||||||||||||||||||| | || | ||| |||
Sbjct 954 CAATGTTCGGTTTCGATACTTTGGAAGCTATGGAAGAATAA-GAAAGACGGAGAATGTGA 1012
Query 1006 TGATTGTTTGCTAGTTGAAGCTCTTCAAGTTGGTGCCTTTGAGAAACTTTTAGTGCTCTT 1065
|||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1013 TGATCGTTTGTTAGTTGAAGCTCTTCAAGTTGGTGCCTTTGAGAAACTCTTAGTGCTCTT 1072
Query 1066 ACAAGTCGGGTGCGAGGATAAGACGAAGGAGAAAGCGAGCGAGCTCTTACGGAATTTAAA 1125
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1073 ACAAGTCGGGTGCGAGGATAAGACGAAGGAGAAAGCGAGCGAGCTCTTGCGGAATTTAAA 1132
Query 1126 CCGTTGTAGAAACGACATCGAGAAGACGAATTGTCTCGATTCTTCAATGCATTTGAAGAA 1185
||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1133 CCGTTGTAGAAACGAGATCGAGAAGACAAATTGTGTCGATTCTTCAATGCATTTGAAGAA 1192
Query 1186 TGTGAAGAAATCATTTTAATCAAACAAACAAAACACACTATTATTCTTTGTAGTTACTCT 1245
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1193 TGTGAAGAAATCATTTTAGTCAAACAAACAAAACACACTATTATTCTTTGTAATTACTCT 1252
Query 1246 GTTTCTAAATAAACTGATTTTTTG 1269
||||||||||||||||||||||||
Sbjct 1253 GTTTCTAAATAAACTGATTTTTTG 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62399277435
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5