BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477529
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02860.2 | Symbols: | zinc ion binding | chr3:625163-627367... 1773 0.0
> AT3G02860.2 | Symbols: | zinc ion binding | chr3:625163-627367
REVERSE LENGTH=1288
Length=1288
Score = 1773 bits (960), Expect = 0.0
Identities = 1158/1250 (93%), Gaps = 28/1250 (2%)
Strand=Plus/Plus
Query 1 AAGTCTAAACCCGACTTGGATCGACCCGACCCGTAAACGAGAACAGATTGCGGAGAAGAA 60
|||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 AAGTCTAATCCCGAGTTGGATCGACCCGACCCGTAAAAGAGAAGAGATTGCGGAGAAGAA 60
Query 61 CGGAGTGAGCCAGGAATTTTGATTCT--C----AC-G--G--------TAAGGATTTAGG 103
||||| | | ||||||||||||||| | || | | |||||| |||||
Sbjct 61 CGGAG-G-G--AGGAATTTTGATTCTCACGGTGACTGTTGTCCTCCTCTAAGGACTTAGG 116
Query 104 GTTTGTTTTGTGTAGAAGGAATTTCTCAGATCTTCGAATAT-CTTCCGTGGTTCTGATAA 162
||||| |||| ||||| ||||||||||||||||| || | ||| || |||| ||||||
Sbjct 117 GTTTGATTTGAATAGAACAAATTTCTCAGATCTTCGTAT-TCCTTGCGAGGTTGTGATAA 175
Query 163 TTTGGGAGTTGCGTGGGTTGCTTCGAAGGAGAGTGATGGATGCTCAAGCGAAGAAGAAGG 222
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 176 TTTGGGAGTTGCGTGGGTTGCTACGAAGGAGAGTGATGGATGCTCAAGCGAAGAAGAAGG 235
Query 223 CGATGTTTCGCTCTAAACTCAACGCCAAGAAGAAAGACACCCGCATAGATTCTCCTCTCG 282
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CCATGTTCCGGTCTAAACTCAACGCCAAGAAGAAAGACACCCGCATAGATTCTCCTCTCG 295
Query 283 TTAGGTACAACGAATCAGACCAGCCTGTGTGTCGAGTTTGCAATGTCGTCTTGAAATCTG 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTAGGTACAACGAATCAGACCAGCCTGTGTGTCGAGTTTGCAATGTCGTCTTGAAATCTG 355
Query 343 AATCACTCTGGGATGTTCATCAAGCTTCTCGTAAGCACCACGAGGCAATTGATAATCTGA 402
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct 356 AATCACTCTGGGATGTACATCAAGCTTCTCGTAAGCACCACGAGGCCATTGATAGTCTCA 415
Query 403 AGGCTAGTGCAGCGGGAGTTCAACGGGGTAGTAAACCTGCTGAAACTCGGCCAACAAAAA 462
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 416 AGGCTAGTGCAGCGGGAGTCCAACGGGGTAGCAAACCTGCTGAAACTCGGCCAACGAAAA 475
Query 463 CTGAAGCTTTGGCTAAATCATCCAAATCTCAGACATCATCTGGTCTTCCACCAAATTTCT 522
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 476 TTGAAGCTTTGGCTAAATCATCCAATTCTCAGACATCATCTGGTCTTCCGCCAAATTTCT 535
Query 523 TCGAAAATCATGAGCCTGCTAGAGCAGAAGTAGAACCAGCAAAATCCAAGAATATAGAGC 582
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 536 TCGAAAATCGTGAGCCTGCTAGAGCAGAAGTAGAACCAGCAAAATCCAAGAATTTAGAGC 595
Query 583 AATCAAAGCAGACTATAGGTTCAGAAACAAACAATTCAAAGGGACCTCTTCCAGCTGGAT 642
|||||||||| |||||||| || |||||||| || |||||||||||||||||||| ||||
Sbjct 596 AATCAAAGCACACTATAGGATCTGAAACAAATAAGTCAAAGGGACCTCTTCCAGCCGGAT 655
Query 643 TCTTTGATAATCAGAAAACTGATTCTTCAAATACCAAAACCACCAGTGAACCTAAACAGA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TCTTTGATAATCAGAAAACTGATTCTTCAAATACCAAAACCACCAGTGAACCTAAACAGA 715
Query 703 GTCAGACACAGACCACTGGTTCTGAAACAAAATCTGTGGTGAAAGGAAACCTTCCGACCG 762
|||||||||||||||||||| | ||||||||| | ||||||| ||||||||||| ||||
Sbjct 716 GTCAGACACAGACCACTGGTCCAGAAACAAAACCAATGGTGAATGGAAACCTTCCAACCG 775
Query 763 GtttttttGATAATAAAGAAGCTGACTTGCTTGCCCATGGAATAAAGCTCGTCAAACCAG 822
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 776 GTTTTTTTGATAATAAAGAAGCTGACCTGCTTGCCCATGGAATCAAGCTCGTCAAACCAG 835
Query 823 ATATCAAAGATGAATATAAAGAATTTGAGAAGTTGATACAAGAAGACCTT-CAGGTAGTG 881
||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 836 ATATCAAGGATGAATATAAAGAATTTGAGAAGTTGATACAAGATGAT-TTGCAGGTAGTG 894
Query 882 GATAGCCGCATGGAAGAAGAAGAGGTTGATGCTGCGGAAACTATAGAAGAGGAGGAACAA 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GATAGCCGCATGGAAGAAGAAGAGGTTGATGCTGCGGAAACTATAGAAGAGGAGGAACAA 954
Query 942 CGAGAGCAAAGATCATACAAAGAGAAAGTAGAGATTCTAAAGAGGAGGAAAATGGAACTT 1001
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 955 CGAGAGCAAAGATCATACAAAGAGAAAGTAGAGATTCTGAAGAGGAAGAAAATGGAACTT 1014
Query 1002 AAAGCAGCTAGATTAGCTAAGCGTAGTAAAACCTCTGAGGGGTCTGTTAAAAAGCCGAAG 1061
||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1015 AAAGCGGCAAGATTAGCGAAGCGCAGTAAAACCTCTGAGGGGTCTGTTAAAAAGCCGAAG 1074
Query 1062 AAGACCGAGGAAGAATC-CCTCAGCGATGAGGAGGATGACGAGGATTCCGCTGTTGATTG 1120
||||| || |||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 1075 AAGACAGAAGAAGAATCGCC-CAGCGATGAGGAGGATGACGAGGATTCTGCTGTTGATTG 1133
Query 1121 GAGAGCTCAACATCTTTGAATAAAACTATAAAAGACTGTTTCAAAATCTGTACCCTGGTA 1180
|||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 1134 GAGAGCTCAACATCTTTGAATAAA-CTAGAAAAGACTGTTTAAAAATCTGTACCCTGGTA 1192
Query 1181 AAACATTCAGTGTTCTCTTAGAATATACAGTGAAAACGAATCAATCTCAT 1230
|||||| || |||||| | |||||||||||||||||| ||||||||||||
Sbjct 1193 AAACATACAATGTTCTATGAGAATATACAGTGAAAACTAATCAATCTCAT 1242
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1229 ATCAGTTTCAGAGGATCAATTGGTATTTGAG 1259
|||||||||||||||||||||||||||||||
Sbjct 1255 ATCAGTTTCAGAGGATCAATTGGTATTTGAG 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5