BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477536
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 878 0.0
AT5G16660.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 169 4e-41
> AT3G02900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G16660.1);
Has 80 Blast hits to 80 proteins in 21 species: Archae - 0;
Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:645810-647648
FORWARD LENGTH=732
Length=732
Score = 878 bits (475), Expect = 0.0
Identities = 559/599 (93%), Gaps = 7/599 (1%)
Strand=Plus/Plus
Query 1 TTCGTTTTGATGTAAAATGGCGTCCTTGGTAGCAGCTCCTATCTCTTTCTCAGGTGACTC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 25 TTCGTTTTGATGTACAATGGCGTCCTTGGTAGCAGCTCCTATCTCTTTCTCAGGTGACTC 84
Query 61 TCATGTCAAAGAACACCGAAACTTCAATGCCATTCGCAAGAGCTCTACATTGACTGTTAA 120
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 85 TCATGTCAAAGCACACCGAAACTTCAATGCGATTCGCAAGAGCTCTACATTGACTGTTCA 144
Query 121 AACAAAATCAATTCGCAGTCACAAACTCTCGGTCTCTGCAAGTTACCGAGCGGGAAGTAA 180
||||||||||| |||||||||||||||||||| |||||| ||||||| | |||||||||
Sbjct 145 AACAAAATCAAACCGCAGTCACAAACTCTCGGTTTCTGCAGGTTACCGTGGGGGAAGTAA 204
Query 181 GGGTGGTGGAAGTAGTGATTTTGTTACCGGTTTTCTTCTAGGAAGTGCTGTGTTTGGAAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 205 GGGTGGTGGAAGTAGTGATTTTGTTACCGGTTTTCTTCTAGGAAGTGCTGTGTTCGGAAC 264
Query 241 TCTCGCTTATATCTTTGCTCCACAGATCCGAAGATCAGTGCTGAACGAAAATGAATATGG 300
||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 265 TCTGGCTTATATCTTTGCTCCACAGATCCGAAGATCAGTGCTGAGCGAGAATGAATATGG 324
Query 301 TTTCAAGAAACCGGAGCAGCCGATGTACTATGATGAGGGCCTAGAGGAGAGAAGAGAGAT 360
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 325 TTTCAAGAAACCGGAGCAGCCGATGTACTATGACGAAGGCCTAGAGGAGAGAAGAGAGAT 384
Query 361 ATTGAATGAGAAAATCGGCCAACTCAATTCAGCCATTGACAACGTTTCGTCGCGTCTGAA 420
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 385 ATTGAATGAGAAAATCGGCCAACTCAATTCCGCCATTGACAAGGTTTCGTCGCGTCTGAA 444
Query 421 AGGCGGTAGAAGCGGTAGCAGCAAGAACAGTTCTTCGCCGTCTGTCCCCGTTGAAACTGA 480
||| ||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct 445 AGGAGGTCGAAGCGGTAGCAGCAAGAACACTTCTTCGCCGTCTGTCCCAGTTGAAACCGA 504
Query 481 CGCAGAAGCAGAAGCTACCGCATGATTGAA-GC--T-CTCTGCTCTATTTTACCAATTGA 536
|||||||||||||||||| ||||||||||| | | |||||||| |||||||||||| |
Sbjct 505 CGCAGAAGCAGAAGCTACTGCATGATTGAATGTAATGCTCTGCTCCATTTTACCAATTCA 564
Query 537 AAACTGTCTTTGATTGGTTCTGTG-TTTTTTCTGTTGGAACCAATG-TAGGGGCTTTTC 593
|||||| ||| |||||||||||| |||||| ||||||||| | | ||||||||||||
Sbjct 565 AAACTGCCTTCCATTGGTTCTGTGGTTTTTT-TGTTGGAACTATTCCTAGGGGCTTTTC 622
> AT5G16660.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast,
membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G02900.1);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:5465484-5467063 REVERSE LENGTH=779
Length=779
Score = 169 bits (91), Expect = 4e-41
Identities = 184/229 (80%), Gaps = 5/229 (2%)
Strand=Plus/Plus
Query 191 AGTAGTGATTTTGTTACCGGTTTTCTTCTAGGAAGTGCTGTGTTTGGAACTCTCGCTTAT 250
||| ||||||| || | ||||||||||||||| ||||||| ||||| || | ||||||
Sbjct 259 AGTGGTGATTTCATTGCTGGTTTTCTTCTAGGAGGTGCTGTCTTTGGCGCTGTTGCTTAT 318
Query 251 ATCTTTGCTCCACAGATCCGAAGATCAGTGCTGAACGAA-AATGA--A-TATGGTTTCAA 306
|||||||||||||||||||||||||| || || || ||| || || | || ||||| |
Sbjct 319 ATCTTTGCTCCACAGATCCGAAGATCGGTTCTAAATGAAGAA-GACGAGTACGGTTTTGA 377
Query 307 GAAACCGGAGCAGCCGATGTACTATGATGAGGGCCTAGAGGAGAGAAGAGAGATATTGAA 366
||| ||| | ||||| | |||||| ||||| || ||||| | | |||||||| | ||||
Sbjct 378 GAAGCCGAAACAGCCAACGTACTACGATGAAGGTTTAGAGAAAACAAGAGAGACACTGAA 437
Query 367 TGAGAAAATCGGCCAACTCAATTCAGCCATTGACAACGTTTCGTCGCGT 415
||||||||| || ||||| |||||||| || ||||| || || ||||||
Sbjct 438 TGAGAAAATAGGACAACTTAATTCAGCGATAGACAATGTCTCTTCGCGT 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5