BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477537
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02910.1 | Symbols: | AIG2-like (avirulence induced gene) f... 737 0.0
> AT3G02910.1 | Symbols: | AIG2-like (avirulence induced gene)
family protein | chr3:649814-650921 FORWARD LENGTH=1108
Length=1108
Score = 737 bits (399), Expect = 0.0
Identities = 543/607 (89%), Gaps = 31/607 (5%)
Strand=Plus/Plus
Query 87 AAT-TCTCCGTTTGATCTCTTCTTCTTTCTATCATGGGACACGAAACAATGATGCCGGCG 145
||| ||| ||||| || || |||| ||| |||||||||||||||||||||| ||| | |
Sbjct 142 AATCTCTACGTTTAATTTC-TCTT-GTTCAATCATGGGACACGAAACAATGACGCC-G-G 197
Query 146 AAAACAACAACAACGCTCGTGTTCACGTACGGAACTCTGAAA-CGAGGATTCTCAAATCA 204
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 198 ----CAACAACAACGCTCGTGTTCACGTACGGAACTCT-AAAGAGAGGATTCTCAAATCA 252
Query 205 TGTCCTGATGCAAGATCTGATCCGATCCGGTGACGCTTCTTTCAAAGGAGTTTACCAAAC 264
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 253 TGTCCTGATGCAAGATCTGATCCGATCTGGTGACGCTTCTTTCAAAGGTGTTTACCAAAC 312
Query 265 TCTAGACAAATATCCTCTCGTCTGTGGACCTTATCGAGTCCCTTTCCTCCTTAACAAACC 324
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 313 TCTAGACAAATATCCTCTCGTCTGTGGACCTTACCGAGTCCCTTTCCTCCTCAACAAACC 372
Query 325 TGGATCAGGTC-ATCACGTTACCGGCGAGCTTTACGCGGTTTCTCCTCGCGGTCTCTCTC 383
|||||| || | ||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 373 TGGATC-GGGCTATCACGTCAACGGCGAGCTTTACGCGGTTTCTCCTCGCGGTCTCTCTC 431
Query 384 GTCTCGACGAGCTCGAAGGGATTAGTCGCGGTCATTACATCCGGCAACAGATCCGTCTCG 443
||||||||||||||||||| || ||||||||||||||||||||||||| ||| |||||||
Sbjct 432 GTCTCGACGAGCTCGAAGGAATCAGTCGCGGTCATTACATCCGGCAACCGATACGTCTCG 491
Query 444 CAGCGGCGGAGGATCT-G--GAA-AC-A-G-AGA-C-GT---CTT---CG---TCGTCGT 485
| ||||||||||| | ||| | | | ||| | | | || |||||||
Sbjct 492 CGGCGGCGGAGGAAGAAGAAGAAGAAGAAGGAGATCTGGAAACAGAGGCGCCGTCGTCGT 551
Query 486 GCGTGGTGGAGGCGTATTACGCGCATAAGAGCTACGAGGAAGAGCTGTGGAAGAGGAATA 545
|||||||||||||||||||||| |||||||| || |||||||||||||||| ||||||||
Sbjct 552 GCGTGGTGGAGGCGTATTACGCTCATAAGAGTTATGAGGAAGAGCTGTGGAGGAGGAATA 611
Query 546 GAGGAAGATCGTTCGGCGCGTATACGGAAAACGAAGCGCGTGGGTATGTGAAACGCAATG 605
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 612 GAGGAAGATCATTCGGCGCGTACACGGAAAACGAAGCGCGTGGATATGTGAAACGCAATG 671
Query 606 ATAGGCCTCAGCATCTTAGCTTCTTGGATCATATCCGTATTTTCGTATCTTCTCCATGTG 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ATAGGCCTCAGCATCTTAGCTTCTTGGATCATATCCGTATTTTCGTATCTTCTCCATGTG 731
Query 666 ATTGATT 672
|||||||
Sbjct 732 ATTGATT 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5