BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477538
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02920.2 | Symbols: RPA32B | Replication protein A, subunit ... 1284 0.0
> AT3G02920.2 | Symbols: RPA32B | Replication protein A, subunit
RPA32 | chr3:650597-654350 REVERSE LENGTH=1262
Length=1262
Score = 1284 bits (695), Expect = 0.0
Identities = 772/810 (95%), Gaps = 2/810 (0%)
Strand=Plus/Plus
Query 240 AACCGCGATGTACGTACCTTGCTTCCCCTGACACTTAAGCAGTTGAGCAGCGCATCAACT 299
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 324 AACCGCGATGTACGTACCTTGCTTCCCCTGACACTGAAGCAGTTGAGCAGCGCATCAACC 383
Query 300 ACTGGTGAATCAAATTTCTCTATTGATGGCGTTGATATTAATACTGTTGCCATTGTTGGA 359
||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 384 ACTGGCGAATCAAATTTCTCTATTGATGGCGTTGATATTAAAACTGTTGTAATCGTTGGA 443
Query 360 CGGATTTCTAGAATGGAGAACAGAATCACTCAGGTCGATTTTGTTGTTGATGACGGTACT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 CGGATTTCTAGAATGGAGAACAGAATCACTCAGGTCGATTTTGTTGTTGATGACGGTACA 503
Query 420 GGCTGGGTTGATTGTGTCAGATGGTGTCACGAGCGTCAAGAAACCGAAGAAATGGAAGCA 479
||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 504 GGCTGGGTTGATTGTGTCAGATGGTGTCACGCTCGGCAAGAAACTGAAGAAATGGAAGCA 563
Query 480 GTCAAGCTGGGAATGTATGTTCGCTTACATGGACACCTGAAAATTTTTCAAGGGAAGCGA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 564 GTCAAGCTGGGAATGTATGTTCGCTTACATGGACACCTGAAAATTTTTCAAGGGAAACGA 623
Query 540 TCTGTGAATGTTTTCTCAATCAGGCCTATCACTGACTTCAATGAGATTGTACACCACTTT 599
|||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 624 TCTGTGAATGTTTTTTCAGTCAGGCCTGTCACTGACTTCAATGAGATTGTACACCACTTT 683
Query 600 ACCGAGTGTATGTATGTCCACATGTACAACACCAAGTTACGGGGTGGCTCTATTACTCAG 659
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 684 ACCGAGTGTATGTATGTCCACATGTACAACACCAAGTTACGGGGTGGTTCTATTACTCAA 743
Query 660 GCTACTGCTACTCCTAGGCCCCAAATGCCATATTCAACAATGCCAACCCCTGCAAAGCCA 719
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 744 GATACTGCTACTCCTAGGCCCCAAATGCCATATTCAACAATGCCAACCCCTGCAAAGCCC 803
Query 720 TACCAAACCGGTCCATCTAATCAGTTCCCGAACCAATTCAATGATCCAATGCATGGTGTA 779
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 804 TACCAAACCGGTCCATCTAATCAGTTCCCGAACCAATTCAATGATTCAATGCATGGTGTA 863
Query 780 AAGCAGAATGTCTTGAATTACCTGAATCAACCTATGCACCTTGTATCTGAAGCTGGTGTT 839
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 864 AAGCAGACGGTCTTGAATTACCTGAATCAACCTATGCACATTGTATCTGAAGCTGGAGTT 923
Query 840 CACTGTGATATAATTGCGCGTGACCTCAGGATTCCGCTGCCTCAAGTCAAGGATGCGTTA 899
||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||
Sbjct 924 CACTGTGATATAATTGCCCGTGAACTCAGGATTCCGCTGCTTCAAGTCAAGGAAGCGTTA 983
Query 900 GAACAGCTCTCAAACGATGGTTGCATTTACTCGACTATGGACGAGACATGCTTCAAATCG 959
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 984 GAACAGCTCTCAAACGATGGTTGCATATACTCGACTTTGGACGAGACATGCTTCAAATCG 1043
Query 960 ACGGCTAACGCTTGATGAAAATGGATTTAT-T-TCATCACATATCAATCCTCCTCTCATG 1017
|| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||
Sbjct 1044 ACTGCTAACGCTTGATGAAAATTGATTTATATGTCAACACATATCAATCCTCCTCTCATG 1103
Query 1018 TTCAAAAGCCTTTTGTATAGACCCTAAGGT 1047
|||||||| ||||||||||| |||||||||
Sbjct 1104 TTCAAAAGTCTTTTGTATAGGCCCTAAGGT 1133
Score = 324 bits (175), Expect = 1e-87
Identities = 227/250 (91%), Gaps = 11/250 (4%)
Strand=Plus/Plus
Query 1 AGAATAAGAAAAGTTGAAATTTGTAAAAGATATGAGAATTTAGTAATTTCCAGAAACTTA 60
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 14 AGAATAAGAAAAGTTGAAATTTGTAAAAGATATGAGAAATTAGTAAATTCCAGAAACTTA 73
Query 61 TTCGAAGCGGTGGATCGAATTCACGACGAGCGTTCCATTAGGGTTTCGATTCAACATCAA 120
|| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 74 TTAGAAGCGGCGGATCGAATTCGCGACGAGCGTTCCATTAGGGTTTCGAATCAACATCAA 133
Query 121 CAAACGA-GAGAGAAAAC-----A-----TGTACGGAGGCGAGTTTGACGGCAACGCTGC 169
||||||| |||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 134 CAAACGACGAGAGAAAACTTTTTAAAACATGTACGGAGGCGATTTTGACGGCAACGCTGC 193
Query 170 TTTCGCCGGCGGCGGTTTCATGCCTTCTCAGGCAACTACGCAAGCGCATGACTCCTCATC 229
||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 194 TTTCGCCGGCGGCGGCTTCATGCCTTCTCAGGCGACTACGCAAGCCCATGAATCCTCATC 253
Query 230 GTCCCTCAAG 239
|||||||||
Sbjct 254 TTCCCTCAAG 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5