BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477540
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02940.1 | Symbols: MYB107, AtMYB107 | myb domain protein 10... 1903 0.0
AT5G16770.1 | Symbols: AtMYB9, MYB9 | myb domain protein 9 | ch... 588 5e-167
> AT3G02940.1 | Symbols: MYB107, AtMYB107 | myb domain protein
107 | chr3:661873-664006 FORWARD LENGTH=1231
Length=1231
Score = 1903 bits (1030), Expect = 0.0
Identities = 1162/1222 (95%), Gaps = 24/1222 (2%)
Strand=Plus/Plus
Query 1 AACTAAGATCTTGCATTCGCCA-TTTTCTCTCTTCTCAATTATCTCTCT-ACCTCAAAGG 58
|||||||||||||| ||| ||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 1 AACTAAGATCTTGCCTTCACCATTTTTCTCTCTTCTCGATTATATCTCTAACCTCAAAGG 60
Query 59 TATATATTTAATAACTAGATGTTATAACAAAATGGGGAGATCACCGTGTTGCGATGAGAG 118
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 --TACATTTAATAGCTAGATGTTATAACAAAATGGGGAGATCACCGTGTTGCGATGAGAG 118
Query 119 TGGATTAAAGAAAGGGCCATGGACGCCAGAAGAAGATCAGAAACTGATAAATCACATAAG 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGGATTAAAGAAAGGGCCATGGACGCCAGAAGAAGATCAGAAACTGATAAATCACATAAG 178
Query 179 AAAACACGGCCATGGAAGCTGGAGAGCTCTACCCAAGCAAGCCGGTTTAAACCGGTGTGG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAAACACGGCCATGGAAGCTGGAGAGCTCTACCCAAGCAAGCCGGTTTAAACCGGTGTGG 238
Query 239 GAAGAGTTGCAGATTGAGATGGACTAATTACTTGAGACCAGATATCAAAAGAGGAAACTT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAAGAGTTGCAGATTGAGATGGACTAATTACTTGAGACCAGATATCAAAAGAGGAAACTT 298
Query 299 CACAGCTGAGGAAGAGCAAACCATCATCAACCTTCATTCTCTTCTTGGGAACAAGTGGTC 358
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 299 CACAGCTGAGGAAGAACAAACTATCATTAACCTTCATTCTCTTCTTGGGAACAAGTGGTC 358
Query 359 GTCTATAGCTGGTCATCTCCCAGGAAGAACGGATAACGAAATAAAGAACTATTGGAACAC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTCTATAGCTGGTCATCTCCCAGGAAGAACGGATAACGAAATAAAGAACTATTGGAACAC 418
Query 419 GCATATTAGAAAGAAACTTATTCAGATGGGGATCGATCCCGTGACCCATAGGCCAAGAAC 478
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 419 GCATATTAGAAAGAAACTTATTCAGATGGGAATCGATCCGGTGACCCATAGGCCAAGAAC 478
Query 479 CGACCATCTAAACGTTCTAGCCGCTCTCCCGCAACTACTAGCTGCCGCAAATTTCAACAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGACCATCTAAACGTTCTAGCCGCTCTCCCGCAACTACTAGCTGCCGCAAATTTCAACAA 538
Query 539 CCTCTTGAATCTAAATCAAAATATACAACTTG-ATGCAACAAGTGTTGCAAAAGCCCAAT 597
|||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||
Sbjct 539 CCTCTTGAATCTAAATCAAAATATACAA-TTGGATGCAACAAGTGTTGCGAAAGCCCAAC 597
Query 598 TGTTACATAGTATGATTCAAGTCCTTAGCAGCAACAATACCTCTTCTTCTTTTGACATTC 657
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 598 TGTTACATAGTATGATTCAAGTCCTTAGCAACAACAATACCTCTTCTTCCTTTGACATTC 657
Query 658 ATCACACCAAC-AATAATCTCTTTGGCCAATCTTCTTTCTTAGAGAACCTACCAAATATT 716
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCACAC-AACCAATAATCTCTTTGGCCAATCTTCTTTCTTAGAGAACCTACCAAATATT 716
Query 717 AGTGAAAATCCTTATGATCAAACCCAAAGCCTCTCTCACATCGACAATCAGTCTCTGGAT 776
| ||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||
Sbjct 717 -G--AAAATCCTTATGATCAAACCCAAGGCCTCTCTCACATTGACGATCAGCCTCTGGAT 773
Query 777 CCGTTTTCTAGCCCGATTCGAGTAGTTGCTCATCAACTTGATCAGAATTTGATTCCGCCC 836
||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct 774 TCGTTTTCTAGCCCGATTCGAGTAGTTGCTTATCAACATGATCAGAATTTTATTCCGCCC 833
Query 837 TTGATTTCGGCATCCCCTGATGAGTCTAAGGAAACCCAAATGATGGTCAAGAACAAGGAA 896
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TTGATTTCGACATCTCCTGATGAGTCTAAGGAAACCCAAATGATGGTCAAGAACAAGGAA 893
Query 897 ATCATGAAGCATAATGATCATACTTCAAACCCTTCGTCGACCTCAACGTTCACACAAGAT 956
||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 894 ATCATGAAGTATAATGATCATACTTCAAACCCTTCGTCGACCTCAACTTTTACACAAGAT 953
Query 957 CATCAGCCATGGTGTGACATAATTGATGATGAAGCAAGTGATTCTTATTGGAAAGAGATC 1016
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 CACCAGCCATGGTGTGACATAATTGATGATGAAGCAAGTGATTCTTATTGGAAAGAGATC 1013
Query 1017 ATAGAGCAAACTTGTTCGGAGCCTTGGCCATTTCGTGAATAGAGATGAAAGAAAAACATT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1014 ATAGAGCAAACTTGTTCGGAGCCTTGGCCATTTCGTGAATAGAGATGAAAGTAAAACATT 1073
Query 1077 AGTCTTATTTTTT-CTGTGGatatacttatatagatatatacatatatGTTGTTAATTAA 1135
||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 1074 AGTCTTATTTTTTTCTGTGGATATA--------GATATATACATATACGTTGTTAATTAA 1125
Query 1136 CTTTCATACAGTTTGTGTCTTAATTATTTTTCGACCATATATACAAAACACATTGATCAT 1195
|||||||||| ||||||||||||||||||| | ||||| |||||||| ||||||||| |
Sbjct 1126 CTTTCATACAATTTGTGTCTTAATTATTTTCCAACCATGTATACAAA-CACATTGAT-A- 1182
Query 1196 ACTGTACAAAACTGATTATCAT 1217
|||||||||||||||||||||
Sbjct 1183 -CTGTACAAAACTGATTATCAT 1203
> AT5G16770.1 | Symbols: AtMYB9, MYB9 | myb domain protein 9 |
chr5:5514884-5516936 FORWARD LENGTH=1284
Length=1284
Score = 588 bits (318), Expect = 5e-167
Identities = 534/636 (84%), Gaps = 23/636 (4%)
Strand=Plus/Plus
Query 89 AATGGGGAGATCACCGTGTTGCGATGAGAGTGGAT-TAAAGAAAGGGCCATGGACGCCAG 147
||||||| ||||||| ||||||||||||| ||| | ||||||||||||||||||| | ||
Sbjct 71 AATGGGGCGATCACCATGTTGCGATGAGAATGG-TCTAAAGAAAGGGCCATGGACACAAG 129
Query 148 AAGAAGATCAGAAACTGATAAATCACA-TAAGAAAACACGGCCATGGAAGCTGGAGAGCT 206
| || ||| | ||||||||| |||||| | | |||||| |||||||| ||||||||||||
Sbjct 130 AGGAGGATGATAAACTGATAGATCACATTCA-AAAACATGGCCATGGCAGCTGGAGAGCT 188
Query 207 CTACCCAAGCAAGCCGGTTTAAACCGGTGTGGGAAGAGTTGCAGATTGAGATGGACTAAT 266
|| || |||||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct 189 CTTCCAAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTAAGATGGACCAAC 248
Query 267 TACTTGAGACCAGATATCAAAAGAGGAAACTTCACAGCTGAGGAAGAGCAAACCATCATC 326
||||||||||| || ||||| |||||||| ||||| | |||||||| ||||| || |||
Sbjct 249 TACTTGAGACCTGACATCAAGAGAGGAAATTTCACTGAAGAGGAAGAACAAACTATTATC 308
Query 327 AACCTTCATTCTCTTCTTGGGAACAAGTGGTCGTCTATAGCTGGTCATCTCCCAGGAAGA 386
||||| ||||| |||||||| |||||||||||||| ||||| ||| |||| || ||||||
Sbjct 309 AACCTCCATTCCCTTCTTGGAAACAAGTGGTCGTCGATAGCCGGTAATCTTCCTGGAAGA 368
Query 387 ACGGATAACGAAATAAAGAACTATTGGAACACGCATATT-AGAAAGAAACTTATTCAGAT 445
||||| || |||||||| |||||||||||||| ||| || |||||||||||| | || ||
Sbjct 369 ACGGACAATGAAATAAAAAACTATTGGAACACACAT-TTGAGAAAGAAACTTCTCCAAAT 427
Query 446 GGGGATCGATCCCGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTCTAGCCGCTCT 505
|||||| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 428 GGGGATTGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTTTAGCAGCTCT 487
Query 506 CCCGCAACT-ACTAGCTGCCGCAAATTTCAACAACCTCTTGAATCTAAATCAAAATATAC 564
|||||| || | |||| |||||||||||||||| |||||||||||| || |||||| | |
Sbjct 488 CCCGCAGCTTA-TAGCCGCCGCAAATTTCAACAGCCTCTTGAATCTCAACCAAAATGTGC 546
Query 565 AACTTGATGCAACAAGTGTTGCAAAAGCCCAATTGTTACATAGTATGATTCAAGTCCTTA 624
|||| |||||||||| | |||| ||||| ||| || |||| | |||||||||||||||||
Sbjct 547 AACTGGATGCAACAACTCTTGCTAAAGCTCAACTGCTACACACTATGATTCAAGTCCTTA 606
Query 625 GCAGCAA---CAATACC-----TC-TTCTTCTT-TTGA-CA--T-T-CATCACACCAACA 669
||| ||| ||| ||| || ||||| || || | || | | || ||| ||||
Sbjct 607 GCACCAATAACAACACCACCAATCCTTCTTTTTCTTCATCAACTATGCAAAACAGTAACA 666
Query 670 ATAATCTCTTTGGCCAATCTTCTTTCTTAGAGAACC 705
||||||||||||||| |||||| |||||||||||
Sbjct 667 CCAATCTCTTTGGCCAAGCTTCTTACTTAGAGAACC 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59788849095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5