BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477542

Length=741
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02960.1 | Symbols:  | Heavy metal transport/detoxification ...  1164    0.0  
  AT5G63530.1 | Symbols: ATFP3, FP3 | farnesylated protein 3 | ch...  63.9    2e-09


> AT3G02960.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr3:667245-668626 REVERSE LENGTH=741
Length=741

 Score = 1164 bits (630),  Expect = 0.0
 Identities = 707/744 (95%), Gaps = 6/744 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAAAGAACAAGCAAAATGGAGAATCAGATAACAAGTCAGAAAAGAAGAACCAGAAA  60
            |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  1    ATGGGAAAGAACAAGCAAAATGGAGAATCAGACAACAAGTCTGAAAAGAAGAACCAGAAA  60

Query  61   AATGGAGATTCATCAGTCGATAAGTCTGATAAGAAAAATCAATGTAAACAAATTGTTCTG  120
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  61   AATGGAGATTCATCAGTCGATAAGTCTGATAAGAAAAATCAATGTAAAGAAATTGTTCTG  120

Query  121  AAGGTTTACATGCACTGTGAAGGATGTGCATCACAAGTTTCTCATTGCTTGAGGGGCTAC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  AAGGTTTACATGCACTGTGAAGGATGTGCATCACAAGTTTCTCATTGCTTGAGGGGCTAT  180

Query  181  GATGGGGTTGAGCAAATTAAGACAGAGATCGGAGACAATAAAGTGGTTGTGTCTGGAAAA  240
            |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  181  GATGGGGTTGAGCATATTAAGACAGAGATAGGAGACAATAAAGTTGTTGTGTCTGGAAAA  240

Query  241  TTTGATGATCCGTTGAAGATATTACGAAGAGTGCAAAAGAAATTTAGTAAAAATGCTGAG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  241  TTTGATGATCCGTTGAAGATATTACGAAGAGTGCAAAAGAAATTTAGTAGAAATGCTGAG  300

Query  301  TTGATTTCCCCAAAACCTAACCCCAAACAAGATCATCAGAAGGAGCCACAACAAAAGAAA  360
             ||||||||||||||| |||||| |||||||||||   |||||||||||| |||||||||
Sbjct  301  ATGATTTCCCCAAAACATAACCCTAAACAAGATCA---GAAGGAGCCACAGCAAAAGAAA  357

Query  361  GAAAGTGCTCCCCAGATCAAAACTGCAATTTTAAAAATGAACATGCACTGTGAAGGATGT  420
            |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  358  GAAAGTGCTCCCGAGATCAAAACTGCAATTTTAAGAATGAACATGCACTGTGAAGGATGT  417

Query  421  GTTCATGAAATCAAAAGAGGCATTGAGAAAATAAAAGGTATTCAATCGGTGGAACCAGAC  480
            |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct  418  GTTCATGAAATCAAAAGAGGCATTGAAAAAATAAAAGGCATTCAATCGGTGGAACCAGAC  477

Query  481  CGGTCAAAGTCAACAGTAGTGGTACGAGGAGTCATGGATCCTCCAAAACTTGTGGAGAAA  540
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  478  CGGTCAAAGTCAACGGTAGTGGTACGAGGAGTCATGGATCCTCCAAAACTTGTGGAGAAA  537

Query  541  ATCAAGAAAAAGCTTGGGAAACACGCAGAGCTTCTAAGTCAAACCAGAGAGAAAGGCAAA  600
            ||||||||||| ||||||||||| |||||||||||||||||||  | |||||||||||||
Sbjct  538  ATCAAGAAAAAACTTGGGAAACATGCAGAGCTTCTAAGTCAAATTACAGAGAAAGGCAAA  597

Query  601  GACAATAATAATAATAA---TCATAAGAATGAAGACAGTGATGGAAACAAAATCTTTAGT  657
            ||||||||||| || ||   | ||||||| ||||| ||||||||||||||||||||||||
Sbjct  598  GACAATAATAAGAAGAACAATAATAAGAAGGAAGAAAGTGATGGAAACAAAATCTTTAGT  657

Query  658  TACCCTCCTCAGTATTCATCCCAACATGCTTATCCCTCTCAGATCTTTAGCGACGAAAAT  717
            |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct  658  TACCCTCCTCAGTATTCATCTCAACATGCTTATCCCTCTCAGATTTTTAGCGACGAAAAT  717

Query  718  GTACATTCCTGTTCGATCATGTGA  741
            |||||||| ||||| |||||||||
Sbjct  718  GTACATTCTTGTTCAATCATGTGA  741


> AT5G63530.1 | Symbols: ATFP3, FP3 | farnesylated protein 3 | 
chr5:25433154-25435834 FORWARD LENGTH=1413
Length=1413

 Score = 63.9 bits (34),  Expect = 2e-09
 Identities = 36/37 (97%), Gaps = 0/37 (0%)
 Strand=Plus/Plus

Query  113  TTGTTCTGAAGGTTTACATGCACTGTGAAGGATGTGC  149
            ||||||| |||||||||||||||||||||||||||||
Sbjct  349  TTGTTCTTAAGGTTTACATGCACTGTGAAGGATGTGC  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35967649252


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5