BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477543
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02970.1 | Symbols: EXL6 | EXORDIUM like 6 | chr3:669103-670... 1655 0.0
> AT3G02970.1 | Symbols: EXL6 | EXORDIUM like 6 | chr3:669103-670541
REVERSE LENGTH=1159
Length=1159
Score = 1655 bits (896), Expect = 0.0
Identities = 1056/1130 (93%), Gaps = 24/1130 (2%)
Strand=Plus/Plus
Query 1 ATCAAAGGCCAAAAGAACAGAAAAAAG-TTTCTTCACGC---GG---TGGCAATGGCG-- 51
||||||||||||||||||||||||||| ||| ||||||| || |||||||||||
Sbjct 1 ATCAAAGGCCAAAAGAACAGAAAAAAGTTTTTTTCACGCGGTGGCAATGGCAATGGCGTC 60
Query 52 T-CTTCTTCCTCCTCCTCCT---TATCCGTCACCATTTTCCTCCTCTTGGCGCCTCTCTG 107
| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 61 TGCTTCTTCCTCCTCCTCCTCCATATCCGTCATCATTTTCCTCCTCTTGGCGCCTCTCTG 120
Query 108 CCTTTCACGTGAGTCACCTTCGCAAATCCCAAACGGAACCCTAGATCTCTCTTTACTATG 167
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTTTCACGTGAGCCACCTTCACAAATCCCAAACGGAACCCTAGATCTCTCTTTACTATG 180
Query 168 GTACGGCCAATTCACGCCTATTCAAAAGGAGAGGGTTCAAGATTTCATAGAATCGCTTAA 227
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 181 GTACGGCCAATTCACGCCTACTCAAAAGGAGAGGGTTCACGATTTCATAGAATCGCTTAA 240
Query 228 CTTCGACGCCAAGGAAGGTCTTGACCCAAAGGTATCGGCCTGGTGGAAAGTGGTGGAGAG 287
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 241 CTTCGACGCCAAGGAAGGTCTTGACCCGAAGGTATCGGCGTGGTGGAAAGTGGTGGAGAG 300
Query 288 TTACCAAGAGAGGTTCGAGGTGAAGGATATTTACCGACAGAAGAAGAGTAACAGAACCGT 347
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTACCAAGAGAGGTTTGAGGTGAAGGATATTTACCGACAGAAGAAGAGTAACAGAACCGT 360
Query 348 AGCTCCGAGGATTAAGGTCAAGGTTGTCCGGAGTTATGTGGATGAGAAGATGAAGTATGG 407
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGCTCCGAGGATTAAGGTGAAGGTTGTCCGGAGTTATGTGGATGAGAAGATGAAGTATGG 420
Query 408 AAAGGAATTGACAATCGGAAATGCTGAGAAACTTGTTGAGACGGCCATCGGAAATATGTC 467
||||||||||||||| || || | ||||||||||||||||||||| ||||||||||||||
Sbjct 421 AAAGGAATTGACAATGGGGAACGGTGAGAAACTTGTTGAGACGGCTATCGGAAATATGTC 480
Query 468 GAAAGTGGTGCCCGTTGTATTACTTTCGGCGCAAGTTAGGGCT-ATTGGCGTAGGGTTTT 526
||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 481 GAAAGTGGTTCCCGTGGTATTACTTTCGGCGCAAGTTAGGGCTCA-TGGCGTAGGGTTTT 539
Query 527 GTAACGGAACTTGCCAACATAACGCCCTTGCCAAAATTAAAGGTCAAAATGAACCGCGAC 586
|| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 540 GTGACGGAACTTGCCAACATAACGCCCTAGCCAAAATTAAAGGTCAAAAAGAACCACGAC 599
Query 587 CGTACATAATGGTAAGCAACCCGGAGGAT-GAATGTCCCGGAGAGTGCGCTTGGCCTTTC 645
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 600 GGTACATAATGGTAAGCAACCCGGAGG-TGGAATGTCCCGGAGAGTGCGCTTGGCCTTTC 658
Query 646 CACACGGCCGACAAGGGTCCACGTGGCATGACCTATCAACCGCCAAGTGGCGAAGTTGGA 705
||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 659 CACACGGCCGATAAGGGTCCACGTGGCATGACCTATCAACCGGCAAGTGGAGAAGTCGGA 718
Query 706 GCCGACGCATTGGTTATTCAGCTAGCCACCGGTTTAGCCGATCTCGCCACCAATCCA-AC 764
|| |||||| |||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 719 GCTGACGCACTGGTTATTCAGCTAGCCACCGGTTTAGCCGATTTGGCCACCAATCCAGA- 777
Query 765 TCTAACCGAGTTCTTATTCAAATCTGAGACGACACCGTACAACGATGACGGAAAGAGAAA 824
||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 778 TCTAACCAAGTCCTTATTCAAATCTGAGACGACACCGTACAACGATGACGTAAAGAAAAA 837
Query 825 CCATG--T-TTCTTCCATCTATATCGCGGACCCTGCAACCAAATGCACTCGGGTTTTTGG 881
||||| | ||| || || ||||| | ||||||||||||||| |||||||||||||||||
Sbjct 838 CCATGAATCTTCGTCAATGTATATTGTGGACCCTGCAACCAAGTGCACTCGGGTTTTTGG 897
Query 882 ATCCGGAGCTTTCCCAGGTTTCACCGGTAGAATTCGGGTTGACCCGGTAACTGGTGGAGC 941
|||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 898 ATCCGGAGCTTTTCCAGGTTTCACTGGTAGAATTCGGGTTGACCCGATTACTGGTGGAGC 957
Query 942 CTTTAATTCACACGGAATCAACCACTTGAAATTCTTGATTCCTTCTATTTGGGACCCTAA 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTTTAATTCACACGGAATCAACCACTTGAAATTCTTGATTCCTTCTATTTGGGACCCTAA 1017
Query 1002 GACCAAATCTTGCTGGACTCCTATGTAAACCGTTACTATTAC-ATATTGTTACACAGTTT 1060
||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||
Sbjct 1018 GACCAAATCTTGCTGGACTCCTATGTAAACCGTTATTATTACGACAT-GTTACACAGTTT 1076
Query 1061 TTACCCTTTATGAACTTTTAAGGTTATCTTGTTATTGGAAGTATTCAATA 1110
|||||||| |||||||||||||||| | |||||||||||| |||||||||
Sbjct 1077 TTACCCTTCATGAACTTTTAAGGTTGTTTTGTTATTGGAAATATTCAATA 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5