BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477544
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02980.1 | Symbols: MCC1 | MEIOTIC CONTROL OF CROSSOVERS1 | ... 577 6e-164
> AT3G02980.1 | Symbols: MCC1 | MEIOTIC CONTROL OF CROSSOVERS1
| chr3:670897-672215 REVERSE LENGTH=744
Length=744
Score = 577 bits (312), Expect = 6e-164
Identities = 420/470 (89%), Gaps = 15/470 (3%)
Strand=Plus/Plus
Query 1 TCATAGATGATTCATCAATGGAGGATCCACGAATCTCTCTCTT-CCCAAGTATTTACTAC 59
|||||||||||||||||||||| ||| || |||||||||| || |||||||||| ||||
Sbjct 23 TCATAGATGATTCATCAATGGAAGATGCAGGAATCTCTCT-TTGCCCAAGTATTCACTAT 81
Query 60 AGACCTATAAAACCTAATGATCTAGATCGTTTGGAGCAAATCCATCGCGACATCTTCCCC 119
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 82 AGACCTATAAACCCTAATGATCTAGATCGTTTGGAGCAAATCCATCGCGATATCTTCCCC 141
Query 120 ATCAAGTATGAGTCTGAGTTTTTTCAGTGTGTTGTGAACGGAGTTGATATCATCTCATGG 179
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 142 ATCAAGTATGAGTCTGAGTTTTTCCAGAGTGTTGTGAACGGAGTTGATATCGTCTCATGG 201
Query 180 GCTGCTGTTGATCGGAGCCGGCCTGATCATCACTGTGATGAACTTATTGGTTTTGTTACA 239
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 202 GCTGCTGTTGATCGGAGCCGGCCTGATGATCACTCTGATGAACTTATTGGTTTTGTTACT 261
Query 240 GCGAG-TTCATA-TTGCTTATGGTTTTT-GATAGATGATCTTATTCATTACGATTCCTCA 296
|| | || | |||| | | | ||||||||||||||| ||||||||||||||
Sbjct 262 GCCAAATTTGTGCTTGCCAAAGATAGCGAGATAGATGATCTTATACATTACGATTCCTCG 321
Query 297 AAAGGAGAGGAGACTTTGATCTACATCTTGACACTCGGAGTTGTGGAAACATACAGAAAC 356
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 322 AAAGGAGAGGAGACTTTGATATACATCTTGACACTCGGAGTTGTAGAAACATACAGAAAC 381
Query 357 C-------C--AATGTCACTTATTAGTGAGGTGATTAATTATGCTTCTGGTTTATCGGTG 407
| | ||||||||||||||||||||| ||||| |||||||| |||||||| |||
Sbjct 382 CGTGGAATCGCAATGTCACTTATTAGTGAGGTAATTAAATATGCTTCCGGTTTATCTGTG 441
Query 408 TGTCAGAGGAGTTTACCTTCATGTGATTGCACACAACAATGCTGCGATCT 457
|||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TGTC-GCGGAGTTTACCTTCATGTGATTGCACACAACAATGCTGCGATCT 490
Score = 326 bits (176), Expect = 2e-88
Identities = 203/216 (94%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 458 ATTACACGGATTCTATCTAATCAAACGACAGCATTTTGACGCGTTCTTGTTTGTCTACTT 517
|||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 528 ATTACATGGATTTTATCTAATCAATCGACATCATTTTGATGCGTTCTTGTTTGTCTACTT 587
Query 518 CATCAACGGTTCTCGAACTCCTTGCTCACCCTTAGAGGTGGCGATGTTTGTTGTGAATTA 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 CATCAACGGTTCTCGAACTCCTTGCTCACCCTTAGAGGTGGCGATGTTTGTTGTGAATTA 647
Query 578 TATGAAGAGTGGCATCAAGTTAGTGGCATCTAAGCTGG-TGAACAGGGAGGAGAAAGGTT 636
|||||||||||| ||||||| ||||||||||||||||| | |||| ||| ||||||||||
Sbjct 648 TATGAAGAGTGGTATCAAGTCAGTGGCATCTAAGCTGGCT-AACAAGGATGAGAAAGGTT 706
Query 637 TGAAATGGCTGATTTGCAAAGACACGGATTGCGTCT 672
||||||||||| ||||||||||||||||||| ||||
Sbjct 707 TGAAATGGCTGTTTTGCAAAGACACGGATTGTGTCT 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35314605341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5