BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477546
Length=725
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03000.1 | Symbols: | EF hand calcium-binding protein famil... 763 0.0
> AT3G03000.1 | Symbols: | EF hand calcium-binding protein family
| chr3:677240-678084 FORWARD LENGTH=845
Length=845
Score = 763 bits (413), Expect = 0.0
Identities = 454/474 (96%), Gaps = 2/474 (0%)
Strand=Plus/Plus
Query 1 CATTACCTGTCGTCGTTGACTTGTCAAGAAGAAACAAATCAACTCTAAAAAAG-AAAATG 59
||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 43 CATTACCTGTCATCGTTGACTTGTCAAGAAGAAACAAATCAACTCT-AAAAAGAAAAATG 101
Query 60 TTCTTCATCGAAATCAAAGCTTGACAGTATTTAAAATCAGATTTGAGATGAGCGGCGACG 119
|| |||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 102 TTGTTCATCGAAATCGAAGCTTGACAGTATTCAAAATCAGATTCGAGATGAGCTGCGACG 161
Query 120 GAGATAAACCGGCGCCGGCGAAACTAGGCGACGAACAATTAGCGGAGCTTCGGGAGATTT 179
||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 162 GAGGCAAACCGGCGCCGGCGAAACTAGGCGACGAACAACTAGCGGAGCTCCGGGAGATAT 221
Query 180 TCCGATCATTTGACCAGAACAAGGATGGAAGTTTGACGGAGCTCGAGTTAGGCTCACTTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TCCGATCATTTGACCAGAACAAGGATGGAAGTTTGACGGAGCTCGAGTTAGGCTCACTTC 281
Query 240 TAAGATCTCTCGGTCTAAAGCCGAGTCAAGACCAACTCGACACCTTGATCCAGAAAGCAG 299
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 282 TAAGATCTCTCGGTCTAAAGCCGAGTCAAGACCAACTCGACACATTGATCCAGAAAGCAG 341
Query 300 ATCGGAATAGCAACGGACTGGTCGAGTTCTCCGAGTTCGTCGCTCTCGTCGAGCCAGATC 359
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 342 ATCGGAATAACAACGGACTGGTCGAGTTCTCCGAGTTCGTCGCCCTCGTCGAGCCAGATC 401
Query 360 TGGTCAAGTGTCCTTACACGGATGATCAGCTTAAAGCCATCTTTAAAATGTTTGACCGAG 419
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 402 TGGTCAAGTGTCCTTACACGGATGATCAGCTTAAAGCCATCTTTAGAATGTTTGACCGCG 461
Query 420 ACGGAAACGGTTACATAACGGCGGCGGAGTTAGCTCATTCGATGGCGAAGCTAG 473
| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 462 ATGGAAACGGTTACATAACGGCGGCGGAGTTAGCCCATTCGATGGCGAAGCTAG 515
Score = 270 bits (146), Expect = 1e-71
Identities = 245/286 (86%), Gaps = 34/286 (12%)
Strand=Plus/Plus
Query 472 AGAAGCTGATCGAGACGGCGATGGTTGTATCGATTTCCAAGAGTTTGTTCAGGCGATTAC 531
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 556 AGAAGCTGATCGAGACGGCGATGGTTGTATTGATTTCCAAGAGTTTGTTCAAGCGATTAC 615
Query 532 TTCAGCTGCATTTGATAATGCTTGGGGTTGAAGAAAGAAAG-T-TATATATA--TA-T-- 584
||||||||| ||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 616 TTCAGCTGCGTTTGATAATGCTTGGGGTTGAAGAAAGAAAGGTATATATATACATAGTTT 675
Query 585 G---t--tt-t-ttt-G-------G-CTTCATTCTCAAATCAAAGACAATTTGGAAGTAT 628
| | || | ||| | | |||||| ||||||||||||||| |||||||||||
Sbjct 676 GAAATACTTGTGTTTTGTTTTTTTGGCTTCATCCTCAAATCAAAGACA-TTTGGAAGTAT 734
Query 629 AAGTGTGTAGGTGCGATTCCATGGAAAATGTTGTGTTATTTACTGTTTCAT-T------- 680
| ||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 735 ATGTGTGTAGGTGCGATTCCATGGAAAATGT-GTGTTATTTATTGTTTCATATTATTCTT 793
Query 681 -GATGAAATTTTGATAGCTTGAAGAGAAAGTTATCATTGTTGGTTT 725
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 794 TGATGAAATTTTGATAGCTTGAAGAGAAAGCTATCATTGTTGGTTT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35163902900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5