BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477548
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03010.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) fam... 1304 0.0
AT5G16870.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) fam... 416 2e-115
> AT3G03010.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family
protein | chr3:678688-680605 REVERSE LENGTH=950
Length=950
Score = 1304 bits (706), Expect = 0.0
Identities = 843/905 (93%), Gaps = 25/905 (3%)
Strand=Plus/Plus
Query 1 ATATTAAGGAGAGACATATTCGTGTGCCCAAACACACCAGAATATCGCCAAAGTCGTTGA 60
||||||||||||||| |||||||||| || || ||||||||||||||||||| |||||||
Sbjct 1 ATATTAAGGAGAGACCTATTCGTGTGGCC-AA-ACACCAGAATATCGCCAAAATCGTTGA 58
Query 61 AACTTGAAAGAAGAAACAGACTTGTCTGTCACACTGCTCAGCCGCCGGAACATCTTGT-A 119
|||||||| |||||||||||| | ||||||| ||||||||||||||| | ||| | |
Sbjct 59 AACTTGAACGAAGAAACAGAC---T-TGTCACA--GCTCAGCCGCCGGAAGA-CTT-TAA 110
Query 120 GGAGG-ATGGATTTGGTGTGGTTAATAAGTGTTCTACTTCTTGGAGCTGCACTTGGATTT 178
||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||| |
Sbjct 111 GGAGGTATGGATTTGGTGTGGTTATTAAGTGTTTTACTTGTTGGAGCTGCACTTGGATAT 170
Query 179 TACATCAGCACTTTACGACAAACCCGCCAAATCTTTGCCCT-CTCCAAATCTGTCGCCAT 237
|||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||
Sbjct 171 TACATCAGCACTTTACGACAAACCCGCCGAATCTTT-CTCTCCTCCAAATCTGTCGCCAT 229
Query 238 AAATGCAGGATCCAGCGGAAATAAGAAGACCAAGTCCAAGGAACCCCTCGAGATAGAGAA 297
| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 230 AGATGCAGGATCCAGCGGGAATAAGAAAACCAAGTCCAAGGAACCCCTCGAGATAGAGAA 289
Query 298 ACTCGCTGATCTTCGCAAAAATTTCAAAATGGTTTTGGTTGTGAGGAATGATCTTAAAAT 357
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ACTCGCTGATTTTCGCAAAAATTTCAAAATGGTTTTGGTTGTGAGGAATGATCTTAAAAT 349
Query 358 GGGTAAAGGGAAGATTGCAGCTCAATGCAGTCATGCAACTTTAGGTTTATACAAGAAACT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 GGGTAAAGGGAAGATTGCAGCTCAATGCAGTCATGCAACTTTAGGTTTATACAAGAAACT 409
Query 418 CCTTCAACGGGCGCCAAGAGCCTTGAACAGATGGGAATATTGTGCTCAGCCAAAAGTTGT 477
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CCTTCAACGGGCGCCAAAAGCCTTGAACAGATGGGAATATTGTGCTCAGCCAAAAGTTGT 469
Query 478 TGTCAAAATCGAAAGTGAGGAAGAGATGCTAGTTTTGCAAGAAAGAGCAAAGACCCTTAA 537
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 470 TGTCAAAATTGAAAGTGAGGAAGAGATGCTAGTTTTGCAAGAAAGAGCAAAGACCCTGAA 529
Query 538 ACTGCCAACCCATATCACCATTGATGCCGGAAAAACACAGATCGCTCCAAATTCAAGAAC 597
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 530 ACTGCCAACCCATATCACCATTGATGCGGGAAAAACACAGATCGCTCCAAATTCAAGGAC 589
Query 598 AGTAATGGCTATTCTTGGACCGGTTGATAATGTTGATGAAGTAACAGGTGGACTAAAGCT 657
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 590 AGTAATGGCTATTCTTGGACCTGTTGATAATGTTGATGAAGTAACAGGTGGACTAAAGCT 649
Query 658 TATGTAATAACTCTAGGATTCGACATTACCA-CACTCTGGCAGAA-GGAAGAGGATGCTA 715
|||||||||||||| |||||||||||||||| ||||||||||||| ||| ||| ||||||
Sbjct 650 TATGTAATAACTCTTGGATTCGACATTACCAACACTCTGGCAGAAAGGA-GAGCATGCTA 708
Query 716 ATTGGCTCCGAATTTTTCAACATTTCTCGGTGACAAATCTGCCTCCCCATCTTCGGAGTA 775
||||||||| || ||||| |||||||||||||||||||||| | ||| ||||| |||||
Sbjct 709 ATTGGCTCCCAAGTTTTCGACATTTCTCGGTGACAAATCTGTTTTCCCTTCTTCTGAGTA 768
Query 776 GATAACTCAATTTTGCATGGATTTGTACAATTGTCTTACTAGAAAATAATCATATGACAA 835
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 769 GATAACTCCATTTTACATGGATTTGTACAATTGTCTTACTAGAAGATAATCATATGACAA 828
Query 836 CATTTGCTGATTATCCCATAA-ATTTTAAAGATGAAGAGTCAGTTTTGATGCTTTCTTTT 894
|||||||||||||||| | || ||||||||||||||| | ||| |||||| || |||
Sbjct 829 CATTTGCTGATTATCC-ACAACATTTTAAAGATGAAG--T---TTT-GATGCTCTCCTTT 881
Query 895 GTTTT 899
|||||
Sbjct 882 GTTTT 886
> AT5G16870.1 | Symbols: | Peptidyl-tRNA hydrolase II (PTH2) family
protein | chr5:5546811-5548736 REVERSE LENGTH=729
Length=729
Score = 416 bits (225), Expect = 2e-115
Identities = 328/378 (87%), Gaps = 6/378 (2%)
Strand=Plus/Plus
Query 284 CTCGAGATAGAGAAACTCGCTGATCTTCGCAAAAATTTCAAAATGGTTTTGGTTGTGAGG 343
|||||||| ||||||||||||||| ||| | | ||||||| ||||||||||| |||||
Sbjct 185 CTCGAGATTGAGAAACTCGCTGATATTCTCGATGATTTCAAGATGGTTTTGGTGGTGAGA 244
Query 344 AATGATCTTAAAATGGGTAAAGGGAAGATTGCAGCTCAATGCAGTCATGCAACTTTAGGT 403
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 245 AATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGTCATGCAACTTTAGGA 304
Query 404 TTATACAAGAAACTCCTTCAACGGGCGCCAAGAGCCTTGAACAGATGGGAATATTGTGCT 463
||||||||||| || ||| || ||||||| ||| ||| || | ||||| | |||||
Sbjct 305 TTATACAAGAAGCTTGTTCGTCGAGCGCCAAAAGCATTGGACTGCTGGGAGGAATGTGCA 364
Query 464 CAGCCAAAAGTTGTTGTCAAAATCGAA-AGTGAGGAAGAGATGCTAGTTTTGCAAGAAAG 522
||||||||||||||||| |||||||| | ||||| |||||||||| |||||||||||
Sbjct 365 CAGCCAAAAGTTGTTGTGAAAATCGAGGAC-GAGGACGAGATGCTAGAATTGCAAGAAAG 423
Query 523 AGC-AAAGACCCTTAAACTGCCAACCCATATCACCATTGATGCCGGAAAAACACAGATCG 581
||| ||| ||||||||||||| |||||||||||||||||||| |||| ||||||||| |
Sbjct 424 AGCTAAAT-CCCTTAAACTGCCTACCCATATCACCATTGATGCTGGAAGAACACAGATTG 482
Query 582 CTCCAAATTCAAGAACAGTAATGGCTATTCTTGGACCGGTTGATAAT-GTTGATGAAGTA 640
| ||||||||||| || || ||||||||||||||||| || || | | ||||||||||||
Sbjct 483 CCCCAAATTCAAGGACGGTTATGGCTATTCTTGGACCAGTCGA-AGTTGTTGATGAAGTA 541
Query 641 ACAGGTGGACTAAAGCTT 658
||||||||||||||||||
Sbjct 542 ACAGGTGGACTAAAGCTT 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5