BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477560
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03120.1 | Symbols: ATARFB1C, ARFB1C | ADP-ribosylation fact... 1714 0.0
AT5G17060.1 | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation fact... 710 0.0
> AT3G03120.1 | Symbols: ATARFB1C, ARFB1C | ADP-ribosylation factor
B1C | chr3:717153-719315 FORWARD LENGTH=1172
Length=1172
Score = 1714 bits (928), Expect = 0.0
Identities = 1096/1170 (94%), Gaps = 40/1170 (3%)
Strand=Plus/Plus
Query 2 GAACCCATTGTACCGAAAACGCAACCTTTGCTTTCTCGGGAAACTCT-T-CAATTCCTGG 59
||| |||||||||||||||||||||||||||||||| |||||||||| | |||||||| |
Sbjct 5 GAATCCATTGTACCGAAAACGCAACCTTTGCTTTCTTGGGAAACTCTCTGCAATTCCT-G 63
Query 60 GAGAAATCG------ATCATCTTAGCTTCTGATTCTCTCTGT-TTTCTTCAGTTTCAATT 112
||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 64 GAGAAATCGACCATCATCATCTTAGCTT-TGATTCTCTCTGTGTTTCTTCACTTTCAATT 122
Query 113 TCTTATTTTGGTTTGTCGATAAGAGAAAGTAAAATACTTCTTGTGAGGGTTTAAGCtttt 172
|| | ||||||||| |||||||||||||||||||| | || |||| ||||||||||||||
Sbjct 123 TC-TGTTTTGGTTTATCGATAAGAGAAAGTAAAATTCGTC-TGTGGGGGTTTAAGCTTTT 180
Query 173 tttGGGTGAGAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACTTTCTTCGGCAACCAG 232
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TTGGGGTGAGAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACCTTCTTCGGCAACCAG 240
Query 233 GAGATGAGGGTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACCATACTGTACAAG 292
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 241 GAGATGAGGGTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACGATACTATACAAG 300
Query 293 CTCCACATAGGAGAAGTTCTGTCAACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTT 352
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 CTCCACATAGGAGAAGTTCTGTCTACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTT 360
Query 353 CAGTACAAGAATGTCATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCC 412
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAGTACAAGAATGTCATCTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCCC 420
Query 413 TTGTGGAGGCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGAC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTGTGGAGGCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGAC 480
Query 473 CGAGAGAGGATTGGTAAAGCCAAACAAGAATTTCAGGATATCATAAGAGACCCATTCATG 532
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 481 CGAGAGAGGATTGGTAAAGCGAAGCAAGAATTTCAGGATATCATAAGGGACCCATTCATG 540
Query 533 CTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCAACAGTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCT 600
Query 593 CGAGAAGTATGTGAAGGGCTTGGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGAGAAGTATGTGAAGGGCTTGGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAA 660
Query 653 GGCACATGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGCACATGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACA 720
Query 713 CTCAAAGAGGTTAAAGCCGCTGGTTACTCATCAGTTGGTCCCTCGTTTTAGCTCTC-T-C 770
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 721 CTCAAAGAGGTTAAAGCCGCTGGTTACTCATCAGTTGGTCCCTCGTTTTAGCACCCCTAC 780
Query 771 CATTTGCAAAGaaaaaaaTCCCTGACTAGCTAAATTGACATACGAAAGTACCAAATCAAG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CATTTGCAAAGAAAAAAATCCCTGACTAGCTAAATTGACATACGAAAGTACCAAATCAAG 840
Query 831 CTCATGGTGTCTCCTGTCTACTCACCATTATATACTTTAGATCCATGGCCACACTCTTCT 890
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 841 CTCATGGTGTCTCCTGTCTACTCACCATTATATACTTTACATCCATGGCCACACCCTTCT 900
Query 891 TCTTGGCC---G----G-TAATATCACAAAA-T---GAAAATCTCTCAAAACTTTTGTAA 938
|| ||||| | | ||||||||||||| | ||||||||||||| ||||||||||
Sbjct 901 TCGTGGCCACTGATATGGTAATATCACAAAACTAATGAAAATCTCTCAAGACTTTTGTAA 960
Query 939 TGGAATTGtttttctttttcttttGTCTTCACATGGCTTTGCTTCTGAAAGCTAATGTTA 998
||||| ||||||| ||||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 961 TGGAAGTGTTTTTGTTTTTCTTTCGTCTTCACATGGCTCTGCTTCTTAAAGCTAATGTTA 1020
Query 999 GTATCAACTAGGCTCCTTTTTGCATAATATGACTTTGGAGCTTCACTGTAAATTCTGATG 1058
||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1021 GTATCAATTAGGCTCCTTTTTGCATAATATGACTTTGGAGCTTTATTGTAAATTCTGATG 1080
Query 1059 GATA-AA--TGTATAAATCTG-CAAAA-TT-C----T-C--ATGAGATTGTTAAAGTGTC 1105
|||| || |||||||||||| ||||| || | | | |||||||| ||||||| ||
Sbjct 1081 GATACAAAATGTATAAATCTGACAAAAATTGCAAAATTCTCATGAGATTATTAAAGTCTC 1140
Query 1106 CCTTATAGCTATAATAGATGATTGATCTTT 1135
|||||||||||| |||||||||||||||||
Sbjct 1141 CCTTATAGCTATGATAGATGATTGATCTTT 1170
> AT5G17060.1 | Symbols: ATARFB1B, ARFB1B | ADP-ribosylation factor
B1B | chr5:5610806-5613065 FORWARD LENGTH=1150
Length=1150
Score = 710 bits (384), Expect = 0.0
Identities = 569/656 (87%), Gaps = 22/656 (3%)
Strand=Plus/Plus
Query 128 TCGATAAGAGAAAGTAAAA-TACTTCTTGTG-AGGGTTTAAGCtttttttGGG--T--GA 181
||||||||| ||| |||| || || || || || |||| |||||||||| | ||
Sbjct 193 TCGATAAGATAAAACAAAACTAATT-TT-TGAAGAGTTT---TTTTTTTTGGGTTTGGGA 247
Query 182 GAGATGGGTCAAACTTTTCGCAAGCTTTTCGATACTTTCTTCGGCAACCAGGAGATGAGG 241
| |||||||||| ||||||| ||||| |||||||||||||||||||| || || ||||||
Sbjct 248 GCGATGGGTCAAGCTTTTCGTAAGCTATTCGATACTTTCTTCGGCAATCAAGAAATGAGG 307
Query 242 GTCGTTATGCTGGGTCTGGATGCGGCTGGCAAAACAACCATACTGTACAAGCTCCACATA 301
|||||||||||||| |||||||| ||||| |||||||| || || |||||||| || ||
Sbjct 308 GTCGTTATGCTGGGGCTGGATGCTGCTGGAAAAACAACTATTCTCTACAAGCTTCATATT 367
Query 302 GGAGAAGTTCTGTCAACTGTTCCCACAATCGGTTTCAATGTTGAGAAAGTTCAGTACAAG 361
||||||||| |||| ||||||||||| || || |||||||||||||||||||||||||||
Sbjct 368 GGAGAAGTTTTGTCTACTGTTCCCACCATTGGATTCAATGTTGAGAAAGTTCAGTACAAG 427
Query 362 AATGTCATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAGCTGAGGCC-CTTGTGGAG 420
||||| ||||||||||||||||||||||||||||||||||| ||||| || ||| |||||
Sbjct 428 AATGTGATGTTCACAGTTTGGGATGTTGGTGGCCAAGAGAAACTGAGACCTCTT-TGGAG 486
Query 421 GCATTACTTCAATAATACCGATGGACTTATATACGTGGTAGACTCCTTGGACCGAGAGAG 480
|||||||||||||||||| |||||||||||||||||||| || ||||| || ||||||||
Sbjct 487 GCATTACTTCAATAATACTGATGGACTTATATACGTGGTGGATTCCTTAGATCGAGAGAG 546
Query 481 GATTGGTAAAGCCAAA-CAAGAATTTCAGGATATCATAAGAGACCCATTCATGCTCAACA 539
||| || ||||| ||| |||||||||||||| ||||||| ||||||||||||||| ||||
Sbjct 547 GATCGGGAAAGC-AAAGCAAGAATTTCAGGAGATCATAAAAGACCCATTCATGCTAAACA 605
Query 540 GTGTCATTCTAGTGTTTGCAAACAAACAAGACATGAGAGGAGCCATGTCTCCTCGAGAAG 599
|| ||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 606 GTATCATTCTGGTGTTTGCAAACAAACAGGACATGAGAGGAGCCATGTCACCGAGAGAAG 665
Query 600 TATGTGAAGGGCTT-GGCTTACTTGATCTCAAGAACAGGAAATGGCATATACAAGGCACA 658
||||||||||| || |||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 666 TATGTGAAGGG-TTAGGCTTATTTGATCTCAAGAACAGGAAATGGCACATACAAGGTACT 724
Query 659 TGTGCTCTTCAAGGAGATGGGCTCTATGAAGGCTTAGACTGGTTATCCGCTACACTCAAA 718
|||||||||| ||||| ||||| ||||||||||| ||||||||||| |||| || ||
Sbjct 725 TGTGCTCTTCGTGGAGACGGGCTTTATGAAGGCTTGGACTGGTTATCATCTACTCTTAAG 784
Query 719 GAGGTTAAAGCCGCTGG-TTACTCATCAGTTGGTCC-CTCGTTTTAGCTCTCTCCA 772
|| |||||||||||||| || | |||| ||||| || ||||||||| ||| ||||
Sbjct 785 GATGTTAAAGCCGCTGGATT-CACATCGGTTGG-CCACTCGTTTTAAATCT-TCCA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5