BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477561
Length=1737
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03130.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2673 0.0
AT5G17160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 209 6e-53
> AT3G03130.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G17160.1);
Has 7130 Blast hits to 3690 proteins in 504 species: Archae
- 22; Bacteria - 2666; Metazoa - 1654; Fungi - 721; Plants
- 246; Viruses - 56; Other Eukaryotes - 1765 (source: NCBI
BLink). | chr3:721291-723646 REVERSE LENGTH=1793
Length=1793
Score = 2673 bits (1447), Expect = 0.0
Identities = 1647/1743 (94%), Gaps = 15/1743 (1%)
Strand=Plus/Plus
Query 1 ATAGCAGAAACGTCTTGTTTTTCAACTGTCATTTTCTCAACCAAAATCCAAC---TT-TT 56
|||||||||||||||||||||||||||||||||||||||||| | ||| ||| || ||
Sbjct 1 ATAGCAGAAACGTCTTGTTTTTCAACTGTCATTTTCTCAACC-AGATCAAACTTTTTGTT 59
Query 57 TTCATTTTCTCTGATTCGTCGCCATGGATTTCCACTGTCTTCCGAGAAGAGATCTTCAAT 116
|||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 60 TTCATTTTCTCTAATTCGTCGCCATGGATTTCCACAGTCTTCCTCGAAGAGATCTTCAAT 119
Query 117 TTTTCTGTAAGAGAAACAAAATCCCAGCCAATATGACCAATATCGCCATGGCTGATGCTC 176
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 120 TTTTCTGTAAGAGGAACAAAATCCCAGCCAATATGACCAATATTGCCATGGCCGATGCTC 179
Query 177 TCAGAGATCTTGAGATTGTGGAAGGTATGGATGAGTTCATGGATCCATCTCGTGACCAGT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCAGAGATCTTGAGATTGTGGAAGGTATGGATGAGTTCATGGATCCATCTCGTGACCAGT 239
Query 237 CTCCAACCAGTGTAGCTAGAAATTTGCCAAGTGCTGCTCGTACTGCAGCTAGAACAACTC 296
||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 240 CTCCAACCAGTGTTGCAAGAAATTTGCCAAGTGCTGCTCGAACTGCTGCTAGAACAACTC 299
Query 297 GAAGGAAGACCACGAAAGATGAAACTCAGTCATCAGAATTGGTGACCCGTTCTTGTTATG 356
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAGGAAGTCCACCAAGGATGAAACTCAGTCATCAGAATTGGTGACCCGTTCTTGTTATG 359
Query 357 TGGTGAGCAAGTCCTTAGCTGGAGAAATGGATCAAGAAAACAAAAACATGAATATGCTCC 416
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 TGGTGAGCAAGTCCTTAGCTGGAGAAATGGATCAAGAAAACAAGGACATGAATATGCTCC 419
Query 417 AGAATCCATCAGTACCTCAGAGCCTTGCTGTGAAGTTAGATGTCACTGATATGATGCCTG 476
|||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct 420 AGAATCCATCAGTACCTCAGAGCCGTGCTGTGAAGTTAGATGTCAATGATATCATGCCTG 479
Query 477 AAGCCAATGTGAGCAAAACTCCAGCGGCGAGAAGCACAAGAAGGGCTCAGGCAGCTGCAT 536
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 480 AAGCCAATGTGAGCAAAACTCCAGCGGCTAGAAGCACAAGAAGGGCTCAGGCCGCTGCGT 539
Query 537 CCTCCAAGAAGGATGAGTCGGTTCAGAGGGTATACAGCACCAGAAGGTCTGTCAGATTGT 596
| |||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 540 CTTCCAAGAAGGATGAGTCGGTTCAGCGGGTTTACAGTACCAGAAGGTCTGTCAGATTGT 599
Query 597 TAGAAGAATCCATGGCTGACCTGAGTTTGAAAACCAATGTACCTGCAAAGAAGCACGAAG 656
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 TAGAAGAATCCATGGCTGACCTGAGTTTGAAAACCAATGTACCTGTAAAGAAGCACGAAG 659
Query 657 ATTCTCCAGCAGGTTCCAAATTCCAGGAAAAGTCAGATGAAAACTCAGAAAATACTGACA 716
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 660 ATTCTCCAGCAGGTTCCAAATTCCAGGCAAAGTCAGATGAGAACTCAGAAAATACTGACA 719
Query 717 AGGGTGGAGTAATGTCAGTGAGAGATTTAAATGATTCGTTGGAGAAGGAATGGGATGGTT 776
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
Sbjct 720 AGGGTGGAGTAATGTCAGGGAGAGATTTAAATGATTCCTTGGAGAAGGAATGGGATGGCT 779
Query 777 CAAAGAATGATCCAGATCTTGATATATTATATGGTGATCTTGGAGATATCACTTTCTTTG 836
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 CAAAGAATGATCCAGATCTTGATATATTATATGGTGATCTTGGTGATATCACTTTCTTTG 839
Query 837 ATGCATCCACCAGTAAGGAACAGATGAATGGAACAGATTCCAGCACGGTTTCAGCTTCCG 896
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
Sbjct 840 ATGCATCCACCAGTAAGGAACATCTGAATAGAACAGATTCCAGCACGGTTTCAGCTTCAG 899
Query 897 ATAGTTTTGTTCTAGTCAATGAACAAGAAACTTCGAAGGAGGATGATTTTGTTGTTGTAG 956
||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||
Sbjct 900 ATAGTTTTGTTCTAGTCAATGAACATGAAACTTCGCAGGAGGATGGTTTTGTTGTTGTAG 959
Query 957 ACCATGCTGCTTCTACTACCACCACAAACACTTTAGCTTGCTACAAAGAAGCAGAGTCTG 1016
|||||||| ||||||||||||||||||||||||| || ||| |||||||| ||||| |||
Sbjct 960 ACCATGCTACTTCTACTACCACCACAAACACTTTGGCCTGCAACAAAGAATCAGAGCCTG 1019
Query 1017 AGCAAATGAGGATTGATTCTGAATCTGAATCAGAGGAAACAGAATATGAAACTGATCCAT 1076
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 AGCAAATGAAGATTGATTCTGAATCTGAATCAGAGGAAACAGAATATGAGACTGATCCAT 1079
Query 1077 GGGAGGGTGATGATTTTGGTGTTGCTGTTGACACAAACCAAGAGGCATTTGCGTCTAAAG 1136
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1080 GGGAGGGTGATGATTTTGGTGTTGCTGTTCACACAAACCAAGAGGCATTTGAGTCTAAAG 1139
Query 1137 TC-CGTGCTAGTGATAATGTGAGTAAAGTTGACTCAGTCACAACAGTTCTGATAGCTGAT 1195
|| | |||||||||||||||||||| ||||||||||| |||| |||||||||||||||
Sbjct 1140 TCTCA-GCTAGTGATAATGTGAGTAAGGTTGACTCAGTGGCAACTGTTCTGATAGCTGAT 1198
Query 1196 GAATCGAAAGAACTTGATTTCTCTCCTTCACCTCTTGCTGAGGAGGAACTCGAAGTAGAC 1255
|||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||| ||||
Sbjct 1199 GAATCGAAAGAACTCGATTTTTCTTCTTCACCTCTTGCTGTGGAGGAACTCGAAGAAGAC 1258
Query 1256 AGCGATGAATGGTCTGATTACGAGATAGGCGAGGTTGAGTTAGAGGAAAACAGTTGCGCA 1315
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||
Sbjct 1259 AGCGATGAATGGTCTGATTATGAGATAGGCGAGGTCGAGTTGGAGGAAAACAGCTGCGGG 1318
Query 1316 TCTGAAGAATCGATTGATATTGAATCAGAAGAGGCTCCTGGTTT-AGATAAGAAGACTCC 1374
||||||||||| ||||| |||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1319 TCTGAAGAATCCATTGAAATTGAATCAGAAGAGGCTCCTG-TTTCAGATAAGAAGACTCC 1377
Query 1375 AGCTTCTTCTTCTTCCTCAAGTCTTGCTGGTAATGAGACAAAAACTTCGTTGTCTCCATT 1434
||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1378 AGCTTCTTCCTCTTCATCAAGTCTTGCTGGTAATGAGACAAGAACTTCGTTGTCTCCATT 1437
Query 1435 TGAAGCAGAATCAATCTTAGAGAGCGAGAAGGACAAGGAGATGGCTGTTAACAACAATGG 1494
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1438 TGAAGCAGAATCAATCTTAGAGAGCGAGGAGGACAAGGAGATGGCTGTTAACAACAATGG 1497
Query 1495 AGAGGGGAAAGCTGAGGCCGAGGTTaagaagacaaagaagaagaagaagaCGATTGATGA 1554
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1498 AGAGGGGAAAGCTGAGGCCGAGGTTAAGAAGACAAAGAAGAAGAAGA---CGATTGATGA 1554
Query 1555 AGAGCTCAGAGATGTGAGCATGAGGCAACTAACGAAGATGGTGAAAGAACTTGCTATTAA 1614
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1555 AGAGCTCAAAGATGTGAGCATGAGGCAACTAACGAAGATGGTGAAAGAACTTGCTATCAA 1614
Query 1615 GAGTAAGCAACAACACAAGGGTCCCGAGTAATGAAGAAAAACCCTTTTAGCCTTTTTGAA 1674
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1615 GAGTAAGCAACAACACAAGGGTCCTGAGTAATGAAGAAAAACTGTTTTAGCCTTTTTGAA 1674
Query 1675 ATCATTTCCTTTCTCTCTTGGAAAAATATTGATGtttttttttCGTTTCCTTTAGGGTGT 1734
||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct 1675 ATCATTTCCTT-CTCTCTTGGAAAAATGTTGATGTTTCTTTT--GTTTCCTTTAGGGTGT 1731
Query 1735 TGT 1737
|||
Sbjct 1732 TGT 1734
> AT5G17160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G03130.1);
Has 14330 Blast hits to 10381 proteins in 896 species: Archae
- 94; Bacteria - 2881; Metazoa - 4019; Fungi - 1576; Plants
- 515; Viruses - 110; Other Eukaryotes - 5135 (source: NCBI
BLink). | chr5:5639646-5642513 REVERSE LENGTH=1993
Length=1993
Score = 209 bits (113), Expect = 6e-53
Identities = 282/359 (79%), Gaps = 29/359 (8%)
Strand=Plus/Plus
Query 80 ATGGATTTCCACTGTCTTCCGAGAAGAGATCTTCAATTTTTCTGTAAGAGAAACAAAATC 139
|||||||||||| | ||| |||||| |||||||||||| |||| ||||| |||||||||
Sbjct 87 ATGGATTTCCACAGCCTTTTGAGAAGGGATCTTCAATTTCTCTGCAAGAGGAACAAAATC 146
Query 140 CCAGCCAATATGACCAATATCGCCATGGCTGATGCTCTCAGAGATCTTGAGATTGTGGAA 199
||||| |||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 147 CCAGCTAATATGACCAATATCGCCATGGCTGATGCTCTCAAATCTCTTGAGATTGTTGAT 206
Query 200 GGTATGGATGAGTTCATGGATCCATCT----C--GTGA-CC--AGTCTCCAACCAGTGTA 250
||| | ||||| | |||| ||| |||| | ||| || | |||||||||||||||
Sbjct 207 GGTCTTGATGAATACATGAATCAATCTGAATCCAGTGCTCCGCATTCTCCAACCAGTGTA 266
Query 251 GCTAGAAATTTGCCAAGTGCTGCTCGTACTGCAGCTAGAACAACTCGAAGGAAGACCACG 310
|| | || | |||| | | | |||||| |||||||||||||| ||||||||||
Sbjct 267 GC-A-AAGCT-GCCA----C--CAAGCACTGCAACTAGAACAACTCGACGGAAGACCACA 317
Query 311 A-AAGA--TGAAACTCAGTCATCAGA--A-TTGGTGACCCGTTCTTGTTATGTGGT-GAG 363
| || | ||| ||||| ||||| | |||||| ||||||||||| | | | |||
Sbjct 318 ACAAAAGCTGAGCCTCAGCCATCATCTCAGTTGGTGTCCCGTTCTTGTCGT-TCGACGAG 376
Query 364 CAAGTC-CTTAGCTGGAGAAATGGATCAAGAAAACAAAAACATGAATAT-GCTCCAGAA 420
|||||| ||| |||||||| ||||| || ||||||| ||||| |||| | |||| ||||
Sbjct 377 CAAGTCTCTT-GCTGGAGATATGGACCAGGAAAACATAAACAAGAATGTTGCTCAAGAA 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85893132495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5