BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477563
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03160.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 922 0.0
> AT3G03160.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: intracellular protein transport; LOCATED
IN: endomembrane system, integral to membrane, endoplasmic
reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
15 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated
31-like (InterPro:IPR008417); BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G17190.1);
Has 102 Blast hits to 102 proteins in 17 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:729768-730467
FORWARD LENGTH=700
Length=700
Score = 922 bits (499), Expect = 0.0
Identities = 615/667 (92%), Gaps = 23/667 (3%)
Strand=Plus/Plus
Query 1 AAAATTCAAGCTGCGATTGC---G-A-AGAAGAGACTTCAGATCTAGCTTGATCCGGTGA 55
|||||||||||||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 47 AAAATTCAAGCTGCGATTGCGAGGAAGAGAAGAGACTTCAGATCTAGCTTGATCCGGTGA 106
Query 56 TAATGGCTCTCGAATGGGTGGTTTTAGGTTACGCGGCGGCGGCCGAAGCGATTATGGTGG 115
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 107 TAATGGCGCTCGAGTGGGTGGTTTTAGGTTACGCGGCGGCGGCTGAAGCGATTATGGTGG 166
Query 116 TGCTATTGACGATGCCGGGACTTGACGGACTCCGCAAGGGATTAGTCGCCGTCACGCGTA 175
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 167 TGCTATTGACGATGCCAGGACTCGACGGACTCCGCAAGGGATTAGTCGCCGTCACGCGTA 226
Query 176 ATCTCCTCAAACCGTTTCTCTCCATAGTTCCTTTCTGTCTCTTCCTCTTAATGGACATCT 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 ATCTCCTCAAACCGTTTCTCTCCATAGTTCCTTTCTGTCTCTTCCTCTTAATGGACATCT 286
Query 236 ACTGGAAATACGAAACTATGCCTTCGTGCGACGGCGATTCCTGCACACCGTCGGAGCATC 295
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 287 ACTGGAAATACGAAACTATGCCTTCGTGCGATGGCGATTCCTGCACACCGTCAGAGCATC 346
Query 296 TTCGTCACCAGAAATCAATGATGAAATCCCAGCGAAACGCGCTTCTGATTGCGGCTGCAC 355
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 347 TTCGTCACCAGAAGTCCATGATGAAATCCCAGCGAAACGCGCTTCTCATTGCGGCTGCAC 406
Query 356 TTGTGTTCTACTGGATCCTTTACTCAGTTACCAATTTGGTTGTCAGGATCGAGCATCTTA 415
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 407 TTGTGTTCTACTGGATCCTTTACTCAGTCACCAATTTGGTTGTCAAGATCGAGCATCTTA 466
Query 416 ACCAGAGGATCGAGAGGCTCAAGAACAAGGATTGATCGTCTCGTCTAAGGTCCAATCAAT 475
||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 467 ACCAGAGGATCGAGAGGCTCAGGAACAAGGATTGATCGTCTCGTCTCAGGT----TCAAT 522
Query 476 TAGTGTAATGCCttttttttggttttcgaggatctttcttatttcgctaggttttctgtt 535
|||||||||||||||||| |||| | |||||| |||| |||||||||||| ||
Sbjct 523 TAGTGTAATGCCTTTTTT--GGTT----A---TCTTTCCCATTTGGCTAGGTTTTCTCTT 573
Query 536 tttcAATGTCTCTGATCTGTGCCTTT-ATGTTCTGGAGATTGAAGGATTAT-TCCTACTT 593
|||||| || |||||| |||| |||| || || |||||||||||||||| | ||||||||
Sbjct 574 TTTCAACGTTTCTGATATGTGTCTTTTATCTTGTGGAGATTGAAGGATTTTATCCTACTT 633
Query 594 TTCTATGCTTGGATTCTTATTTGTTACCAGATTGAGATTGtttttttttGTTGAATTTTG 653
||||||| |||||||||||||||| ||||||||| |||||||| || |||||||||||
Sbjct 634 TTCTATGTTTGGATTCTTATTTGTAACCAGATTGTGATTGTTTCTT---GTTGAATTTTG 690
Query 654 ATTGACT 660
|||||||
Sbjct 691 ATTGACT 697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31898683345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5