BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477567
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2255 0.0
> AT3G03210.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast
hits to 59 proteins in 17 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes
- 3 (source: NCBI BLink). | chr3:740770-742309 FORWARD
LENGTH=1540
Length=1540
Score = 2255 bits (1221), Expect = 0.0
Identities = 1431/1525 (94%), Gaps = 44/1525 (3%)
Strand=Plus/Plus
Query 1 AGAAGAAGCCTACGGTTGTTCTGTTCCTTTCAATCTCACCAAATTTTCATCTTCGCCTTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 7 AGAAGAAGCCTACGGTTGTTCTGTTCCTTTCAATCTCACCAAATTTTCATCTTCACCTTC 66
Query 61 AATTTGGATGGATTCTCTTCACCAAACCAAATTCGTAACCCTAGCTTCTTCTTAAATTAT 120
||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 67 AATTTTGATAGATTCTCTTCACCGAACCAAATCCGTAACCCTAGCTTCTTCTTAAATTAT 126
Query 121 --AG-ACAAG-TTTAATTCGAATCTGGATGAAATTTTGGTTTTGTTTGTCTAGATGGAAT 176
|| | ||| ||||||||||||||||||||| |||| | |||||||||||||||
Sbjct 127 AGAGAAAAAGAGTTAATTCGAATCTGGATGAAA--TTGG---T-TTTGTCTAGATGGAAA 180
Query 177 TCTAGATGTGTCTGATTCCGAAA-C-----CTGAGAGATGCTGGGAGCGATTCATTTCGG 230
||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||
Sbjct 181 TCTAGATGTGTCTGATTCCGAAATCTGAGTCTGAGAGATGCTAGGAGCGATTCATTTGGG 240
Query 231 AGTATTAGCAGCTTGTTTCGTCCTCTTCGTTCCCATGGCAATGGCTGGTTGGCATCTGAG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTATTAGCAGCTTGTTTCGTCCTCTTCGTTCCCATGGCAATGGCTGGTTGGCATCTGAG 300
Query 291 CAGGAACAAGATGCTCTTCTTTAGTGGCGCTTTGTTTATTTCTCTCGCGGTTTGTGTTCA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGGAACAAGATGCTCTTCTTTAGTGGCGCTTTGTTTATTTCTCTCGCGGTTTGTGTTCA 360
Query 351 CCTCACGCCTTATTTCCCTTCCGTTTCCGACATCGTTGCCTCTGTTTCGTCTGTTGTTGT 410
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TCTCACGCCTTATTTCCCTTCCGTTTCCGACATCGTTGCCTCTGTTTCCTCTGTTGTTGT 420
Query 411 CTACGATCATCGTATCTCTTGTATTAACGAGGTGAATCAGATTGTCTGGGATGTTAAACC 470
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 421 CTACGATCATCGTATCTCTTGTATCAACGAGGTTAATCAGATTGTCTGGGATGTTAAACC 480
Query 471 GGTCA-CGAATCCGGAATCTGTTCGTAGAAATAATGGCTCGACAAAGCTTGATTATTTCG 529
||| | |||||||||| ||||||||||| || |||||||| |||||||||||||||||||
Sbjct 481 GGT-ACCGAATCCGGAGTCTGTTCGTAGGAACAATGGCTCAACAAAGCTTGATTATTTCG 539
Query 530 ACAAGAATTGGGATTGGATGAAATCGAGGAAAGTTTTGAGTTGTGAGTTTCAGAAATTGG 589
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGAAGAACTGGGATTGGATGAAATCGAGGAAAGTTTTGAGTTGTGAGTTTCAGAAATTGG 599
Query 590 ATAAGTTTGATGTTTCGGATTTGTTGAATGGATCGTGGGTTGTTGTTGCTGGTGATTCTC 649
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATAAGTTCGATGTTTCGGATTTGTTGAATGGATCGTGGGTTGTTGTTGCTGGTGATTCTC 659
Query 650 AGGCGAGATTCGTGGCTTTGTCTTTGTTGAATCTTGTTTTGGGTTCGGATTCCAAGGCTA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGGCGAGATTCGTGGCTTTGTCTTTGTTGAATCTTGTTTTGGGTTCGGATTCCAAGGCTA 719
Query 710 TGGATTCGGTTAGAGGTGATCTGTTTAAGAGACATAGTGATTACAGCATTGTGGTTAAAG 769
|||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 720 TGGATTCGGTTAGAGGGGATTTGTTTAGGAGACATAGTGATTACAGCATTGTGGTTAAGG 779
Query 770 AGATTGGGATGAAGCTAGATTTTGTGTGGGCTCCTTATGAGAAAGATTTGGATGATCTTG 829
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 AGATTGGGATGAAGCTTGATTTTGTTTGGGCTCCTTATGAGAAAGATTTGGATGATCTTG 839
Query 830 TGGTATCTTATAAGAAGATGAAAAAGTATCCTGATGTTGTGATCATGGGAACTGGGTTAT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGGTATCTTATAAGAAGATGAAAAAGTATCCTGATGTTGTGATCATGGGAACTGGGTTAT 899
Query 890 GGCATATGCTTCATGTGAACAATGCTTCGGATTTCGGTTTTCGGTTGAAGG-AATTGAGT 948
|||||||||||||||||||||||||||| ||||| |||||| |||||| || ||||||||
Sbjct 900 GGCATATGCTTCATGTGAACAATGCTTCAGATTTTGGTTTTAGGTTGA-GGCAATTGAGT 958
Query 949 AGTCATGTGGAGTCTCTAGTGCCCTTTACGCCAAAGGAGCAAGAAGGAGGCGGATCGGTT 1008
|||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 959 AGTCATGTGGAGTCTCTAGTGCCCCTTACGCCAAAGGAGCAAGAAGGAGGTGGGTCGGTC 1018
Query 1009 TCCGGTAGATCTGTGCATCTGTTCTGGATTGGGATGCCGGTTTTGATCAACGGGATGTTG 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCCGGTAGATCTGTGCATCTGTTCTGGATTGGGATGCCGGTTTTGATCAACGGGATGTTG 1078
Query 1069 AATACAGATGAGAAGAAGGAGAAGATGAGTGATACCGTGTGGCATGATTATGATAGATCG 1128
||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1079 AATACGGATGAGAAGAAGGAGAAGATGAGTGATACGGTGTGGCATGAGTATGATAGATCA 1138
Query 1129 CTCGGGGAGAGTAAGATCTTGCGCCAAATGGGCGGTCCTCTTATCTTGCTTGATATCCAG 1188
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1139 CTCGGGGAGAGTAAGATCTTACGTCAAATGGGTGGTCCTCTTATCTTGCTTGATATCCAG 1198
Query 1189 TCCTTCACATGGAACTGTGGACCGCAATGTACACTTGACGGGATGCATTATGACTCTGCG 1248
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TCGTTTACCTGGAACTGTGGACCGCAATGTACACTTGACGGGATGCATTATGACTCTGCG 1258
Query 1249 GTCTATGATGCCGCTGTCCATGTCATGCTCAATGCGTTGCTTATTGAATCTCATCAAACT 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1259 GTCTATGATGCCGCTGTCCATGTCATGCTCAATGCGTTGCTTATTGAATCTCATCAATCT 1318
Query 1309 TTATGAGTTCTTGACACGGttttttt--GTT------------A----G---GGG-TTCT 1346
|||||||||||||||||| ||||||| ||| | | ||| ||||
Sbjct 1319 TTATGAGTTCTTGACACGTTTTTTTTTTGTTTTTTTTCCTTTTATTTTGTTTGGGGTTCT 1378
Query 1347 CTTGTAGAGTTTTAAGAGAAGTGGGATGTTCATAGGAATTTTACAACACACGGTGTTCCT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1379 CTTGTAGAGTTTTAAGAGAAGTGGGATGTTCATAGGAATTTTACAACACACGGTGATCCT 1438
Query 1407 TTTGGCCTGAGTGATCTTCACATTGGA-A-GTAAGTGAACTTGCATTCTTGGCTATAATA 1464
||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||||||
Sbjct 1439 TTTGGCCTGAGTGATCTTCACATTGGAGAAGTAAGTGAACTTACATTCATGGCTATAATA 1498
Query 1465 GGTTTAATATCTTTTGACTTTGAGA 1489
|||||||||||||||||||||||||
Sbjct 1499 GGTTTAATATCTTTTGACTTTGAGA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73443397335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5