BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477568
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03220.1 | Symbols: ATEXPA13, EXP13, ATEXP13, ATHEXP ALPHA 1... 1783 0.0
> AT3G03220.1 | Symbols: ATEXPA13, EXP13, ATEXP13, ATHEXP ALPHA
1.22, EXPA13 | expansin A13 | chr3:742354-744047 REVERSE LENGTH=1174
Length=1174
Score = 1783 bits (965), Expect = 0.0
Identities = 1071/1120 (96%), Gaps = 16/1120 (1%)
Strand=Plus/Plus
Query 1 ATCAAAATCTCTAAAATC-AAAATTGGCATTTTCTCTCTCGAATTCTCGCCGGAGAGATG 59
|||||||||||||||||| |||||| ||| || | |||| ||||||||||||||||
Sbjct 24 ATCAAAATCTCTAAAATCAAAAATTCGCA--TT-T-TCTC----TCTCGCCGGAGAGATG 75
Query 60 CAACGGTTTCTTCTACCTTTACTCTTCCTTACACTATCGCCGCCGGCGATTTCTCATTAC 119
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 76 CAACGGTTTCTTCTACCTTTACTCTTCCTTGCACTATCGCCGCCGGCGATTTGTCATTAC 135
Query 120 TCTTCCTCAACCTCTTCTCCTTCTTCTTCATCCGTCTCTTCCGACGCCTCAGAATGGCGT 179
||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||
Sbjct 136 TCTTCCTCAACCTCTTCACCTTCTTCGTCCTCCGTTTCTTCCGACGCCTCAGAATGGCGT 195
Query 180 CCAGCTCGAGCCACCTACTACGCCGCTTCTAATCCTCGAGACGCGGTGGGCGGTGCGTGT 239
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 196 CCAGCTCGAGCCACCTACTACGCCGCTACGAATCCTCGAGACGCGGTGGGCGGTGCGTGT 255
Query 240 GGATACGGAGATCTCGTCAAATCTGGGTACGGTATGGCTACGGTTGGTCTAAGCGAGACT 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 256 GGATACGGAGATCTCGTCAAATCTGGGTACGGTATGGCTACTGTTGGTCTAAGCGAGACT 315
Query 300 CTGTTTGAGCGTGGTCAGATCTGTGGTGCTTGTTTCGAGCTCAGATGTGTTGATGATCTC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 CTGTTTGAGCGTGGTCAGATCTGTGGTGCTTGTTTCGAGCTCAGATGTGTTGATGATCTC 375
Query 360 CGTTGGTGTATCCCTGGAACTTCAATTATTGTCACTGCTACGAATTTCTGTGCTCCTAAT 419
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 376 CGTTGGTGTATCCCTGGAACTTCAATTATACTCACCGCTACGAATTTCTGTGCTCCTAAT 435
Query 420 TACGGATTTGATCCAGATGGTGGTGGTCATTGTAATCCACCGAACAAACATTTCGTGCTT 479
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 436 TACGGATTTGATCCCGACGGTGGTGGTCATTGTAATCCACCTAACAAACATTTCGTGCTT 495
Query 480 CCGATCGAAGCGTTTGAGAAGATCGCTATTTGGAAAGCTGGGAACATGCCGGTGCAGTAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CCGATCGAAGCGTTTGAGAAGATCGCTATTTGGAAAGCTGGGAACATGCCGGTGCAGTAT 555
Query 540 CGAAGGATCAACTGTAGAAGGGAAGGGAGCATGCGGTTTACAGTCGATGGTGGAGGCATT 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 556 CGAAGGATCAACTGTAGAAAGGAAGGGAGCATGCGGTTTACAGTCGATGGTGGAGGCATT 615
Query 600 TTCATTTCGGTTCTGATCACCAATGTTGCAGGGTCCGGTGATGTAGCTGCTGTGAAGATC 659
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 616 TTCATTTCGGTTTTGATCACCAATGTTGCAGGGTCCGGTGATATAGCTGCTGTGAAGATC 675
Query 660 AAAGGATCGAGAACCGGGTGGTTACCTATGGGTCGTAATTGGGGACAGAATTGGCATATC 719
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 676 AAAGGGTCGAGAACCGGGTGGTTACCTATGGGTCGTAATTGGGGACAAAATTGGCATATT 735
Query 720 AATGCTGATCTCAAGAACCAAGCTCTCTCATTTGAAGTAACTTCTAGTGACAGGTCAACC 779
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 AATGCTGATCTCAGGAACCAAGCTCTCTCATTTGAAGTAACTTCTAGTGACAGGTCAACC 795
Query 780 GTGACATCTTACAACGTCTCCCCTAGAAACTGGAATTATGGACAGACCTTCGAAGGGAAA 839
|||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 796 GTGACATCTTACAATGTCTCCCCGAAAAACTGGAATTATGGACAGACCTTCGAAGGGAAA 855
Query 840 CAATTCGAGACTCCGTGAGACAGAGACGGGTGCATTGAGATA---TCTCATGATTCTTTT 896
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||
Sbjct 856 CAATTCGAGACTCCGTGAGACAGAGACGGACACATTGAGATACAATCCCATGATTCTTTT 915
Query 897 TT-CCGGGTCAGAATTTTTTGATGGCAAGCATATCGATCTTGGTCTAAGGTTATCTTTAG 955
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 916 TTTCCGGGTCAGAATTTTTTGATGGCAAGTATATCGATCTTGGTCTAAGGTTATCTTTAG 975
Query 956 GGTTAGAAA-GGAATGAACTTGGGTCAGACTTTTGCATTTCATAGTTCTCTCTCTCCCAC 1014
|||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GGTT-GAAAAGGAAAGAACTTGGGTCAGACTTTTGCATTTCATAGTTCTCTCTCTCCCAC 1034
Query 1015 GCATAGGTACAAAAA-TCACCAATGTACTAAGAACAGTGATTACACAAACATCACTATTG 1073
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1035 GCATAGGTACAAAAACTCACCAATGTACTAAGAACAGTGATCACACAAACATCACTATTG 1094
Query 1074 TATCTATTTGTTTACATTACTAAGGAGCGAAAGCTTCCTT 1113
||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TATCTATTTGTTTACATTACTAAGGAGCGAAAGCTTCCTT 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5