BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477571
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03250.1 | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOS... 2815 0.0
AT5G17310.2 | Symbols: UGP2 | UDP-glucose pyrophosphorylase 2 |... 1598 0.0
> AT3G03250.1 | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOSPHORYLASE
1 | chr3:749390-754159 REVERSE LENGTH=1926
Length=1926
Score = 2815 bits (1524), Expect = 0.0
Identities = 1728/1824 (95%), Gaps = 23/1824 (1%)
Strand=Plus/Plus
Query 1 CTCCCTTCGCCTATAAATATTTCTCTGC-TTTAATTTCCAATTTTCTCT-CTTCATTCAC 58
||||||| |||||||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 16 CTCCCTTGGCCTATAAATATTTCTCTGCTTTTAATTTCCAATTTGCTCTGATTCATTCAC 75
Query 59 AAAAAACAATCCTCTCTTCG---tt-tttttCTTTTGGATCCAAAG--CTCTTAAATCTG 112
||| |||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 76 AAATAACAATCCTCTCTTCGTTTTTGTTTTTCTTTTGGATCCAAAGCTCTCTTAAATCTG 135
Query 113 -CAATCAACAATGGCCGCCACCACCGAGAATCTCCCTCAACTCAAATCCGCCGTCGATGG 171
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 136 TAAATCAACAATGGCCGCCACCACTGAGAATCTCCCTCAACTCAAATCCGCCGTCGATGG 195
Query 172 CCTTGCTGAGATGAGTGAGAATGAGAAGAGCGGATTCATCAGCCTTGTTTCACGTTACCT 231
|||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 196 CCTTACTGAGATGAGTGAGAGTGAGAAGAGCGGATTCATCAGCCTGGTTTCACGTTACCT 255
Query 232 GAGCGGTGAGGCACAGCACATTGAGTGGAGTAAGATCCAGACACCTACTGATGAAATCGT 291
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 256 GAGCGGTGAGGCACAACACATTGAGTGGAGTAAGATCCAGACTCCTACCGATGAAATCGT 315
Query 292 TGTTCCCTACGAGAAAATGGCTTCC-GTCTCCCAAGATGTTTCCGAGACCAAGAATCTGT 350
||||||||||||||||||| | || ||||||||||||||| ||||||||||||||||||
Sbjct 316 TGTTCCCTACGAGAAAATGAC-CCCTGTCTCCCAAGATGTTGCCGAGACCAAGAATCTGT 374
Query 351 TGGACAAACTTGTTGTGTTAAAGCTTAATGGAGGTCTTGGGACAACAATGGGATGCACTG 410
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 375 TGGACAAACTTGTTGTGTTGAAGCTTAATGGAGGTCTTGGAACAACAATGGGATGCACTG 434
Query 411 GCCCCAAGTCGGTTATCGAAGTTCGTGACGGTTTGACATTTCTTGATCTGATTGTTATCC 470
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 435 GCCCGAAGTCCGTTATCGAAGTTCGTGATGGTTTGACATTTCTTGATCTGATTGTTATCC 494
Query 471 AGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCGTTGGTTCTCATGAACTCAT 530
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 495 AGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCGTTAGTTCTCATGAACTCGT 554
Query 531 TTAATACACATGATGACACACAAAAGATTGTGGAAAAGTACACCCACTCAAATGTTGACA 590
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 555 TTAATACACATGATGACACACATAAGATTGTGGAAAAGTACACCAACTCAAATGTTGACA 614
Query 591 TTCACACATTTAACCAGAGCAAATATCCCCGTGTTGTGGCAGATGAGTTTGTGCCATGGC 650
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TTCACACTTTTAACCAGAGCAAATATCCCCGTGTTGTGGCAGATGAGTTTGTGCCATGGC 674
Query 651 CCAGCAAGGGAAAGACCGACAAGGAGGGCTGGTATCCTCCTGGTCATGGTGATGTATTCC 710
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 675 CCAGCAAGGGAAAGACCGACAAGGAGGGCTGGTATCCTCCCGGTCATGGTGATGTATTCC 734
Query 711 CAGCCCTCATGAACAGTGGAAAGCTCGATACTTTCTTATCACAGGGTAAGGAATACGTGT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 735 CAGCCCTCATGAACAGTGGAAAGCTCGATACTTTCTTATCACAGGGTAAGGAATATGTGT 794
Query 771 TTGTTGCCAATTCAGACAACTTGGGTGCCATCGTTGACTTAACAATCCTGAAGCATTTGA 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TTGTTGCCAATTCAGACAACTTGGGTGCCATCGTTGACTTAACAATCCTGAAGCATTTGA 854
Query 831 TCCAGAACAAGAACGAGTACTGCATGGAAGTTACGCCCAAAACCTTAGCTGATGTAAAGG 890
|||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 855 TCCAGAACAAGAACGAATACTGCATGGAGGTTACACCCAAAACCTTAGCTGATGTAAAGG 914
Query 891 GAGGAACTCTCATTTCTTATGAAGGCAAAGTCCAGCTTCTGGAGATTGCTCAGGTTCCGG 950
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 915 GGGGAACTCTCATTTCTTATGAAGGCAAAGTCCAGCTTCTGGAGATTGCTCAGGTTCCTG 974
Query 951 ATGAACATGTCAATGAATTCAAATCAATTGAGAAGTTCAAGATATTCAACACAAACAACT 1010
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 ATGAACATGTCAATGAGTTCAAATCAATTGAGAAGTTCAAGATATTCAACACAAACAACC 1034
Query 1011 TATGGGTTAACTTGAAGGCCATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGGAGA 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 TATGGGTTAACTTGAAGGCCATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGGAGA 1094
Query 1071 TCATTCCAAACCCAAAGGAAGTTGATGGAGTCAAAATTCTTCAACTGGAAACTGCAGCTG 1130
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1095 TCATTCCAAACCCAAAGGAAGTTGATGGAGTCAAAGTTCTTCAACTGGAAACTGCAGCCG 1154
Query 1131 GTGCTGCGATAAGGTTCTTTGACAATGCTATCGGTGTTAATGTACCTCGTTCACGGTTCT 1190
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1155 GTGCTGCGATAAGGTTCTTTGACAACGCTATCGGTGTTAATGTACCTCGCTCACGGTTCT 1214
Query 1191 TGCCAGTGAAGGCAAGCTCAGACTTGCTGCTCGTCCAGTCTGATCTCTACACGTTAGTTG 1250
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1215 TGCCAGTGAAGGCAAGTTCAGACTTGCTGCTCGTCCAGTCTGATCTCTACACCTTAGTTG 1274
Query 1251 ATGGCTTCGTTACCCGAAACAAAGCTAGAACTAACCCCTCAAACCCATCAATTGAATTGG 1310
||||||| || || |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1275 ATGGCTTTGTCACTCGAAACAAAGCTAGAACTAACCCCTCGAACCCGTCAATTGAATTGG 1334
Query 1311 GACCTGAGTTCAAGAAGGTGGCTAATTTCTTGAGCCGGTTTAAGTCCATTCCTAGTATAG 1370
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1335 GACCCGAGTTCAAGAAGGTGGCTACTTTCTTGAGCCGGTTTAAGTCCATTCCTAGTATAG 1394
Query 1371 TCGAGCTCGACAGCCTTAAGGTGTCTGGGGATGTCTGGTTTGGCTCTTCGGTTGTTCTCA 1430
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1395 TCGAGCTCGACAGCCTTAAGGTGTCTGGTGATGTCTGGTTTGGCTCTTCCATTGTTCTCA 1454
Query 1431 AGGGAAAGGTAACTGTGACTGCAAAATCCGGTGTGAAGCTCGAAATTCCGGACAGGGCCG 1490
|||| ||||| |||||| | |||||||||||||||||||| |||||||||||||||||||
Sbjct 1455 AGGGCAAGGTGACTGTGGCGGCAAAATCCGGTGTGAAGCTTGAAATTCCGGACAGGGCCG 1514
Query 1491 TGGTCGACAACAAGAACATCAATGGTCCAGAAGACCTCTGAATAAGACAAATTCAAAGTC 1550
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1515 TGGTCGAGAACAAGAACATCAATGGTCCAGAAGACCTCTGAATAAAACAAATTCAA-GTC 1573
Query 1551 TTC--CC-TCTCTCGGGGAAGACACATCTTGATACTCTTTTAATTGGTGTGAAAAGATCA 1607
||| || |||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1574 TTCTTCCCTCTCTCATGGAAGACACATCTTGATACTCCTTTAATTGGTGTGAAAAGATCA 1633
Query 1608 CA-GTGTCACAGCAAAGCAAGTTTATGAAGAATGAATAAATAATGTTTCTTTTT------ 1660
|| ||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1634 CAAGTGGCACAGCAAAGCAAGTTTATGAAGAAAGAATAAATAATGTTTCTTTTTCTTTTT 1693
Query 1661 GCAGCCTAGCAAAGTCTTTTCTTCTTTGGACTTTATTTTAATTTTGCTCGTTGAATTTTC 1720
||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1694 GCAGCTTAGCAAAGTCTTTTCCTCTTTGGACTTTATTTTAATTTTGCTCTTTGAATTTTC 1753
Query 1721 CGAAAACATAACATTTAAAAGTTCGATTGTATTTGGGTTCCATCCGCAATTATTTT-CTT 1779
| ||||||| ||||||| | |||||||| ||||||||||| |||| |||| ||||| |||
Sbjct 1754 CCAAAACATCACATTTATATGTTCGATTATATTTGGGTTCTATCCACAATCATTTTTCTT 1813
Query 1780 TTTGATAATCCACTCTTTCTTTCC 1803
||||||||||||||||||||||||
Sbjct 1814 TTTGATAATCCACTCTTTCTTTCC 1837
> AT5G17310.2 | Symbols: UGP2 | UDP-glucose pyrophosphorylase 2
| chr5:5696645-5700922 REVERSE LENGTH=1800
Length=1800
Score = 1598 bits (865), Expect = 0.0
Identities = 1246/1431 (87%), Gaps = 21/1431 (1%)
Strand=Plus/Plus
Query 114 AATCAACAATGGCCGCCA-C-C-ACCGAGAATCTCCCTCAACTCAAATCCGCCGTCGATG 170
||||| | ||||| |||| | | |||||||| |||||||| |||||||||||||||||||
Sbjct 70 AATCATCCATGGCTGCCACCGCAACCGAGAAGCTCCCTCAGCTCAAATCCGCCGTCGATG 129
Query 171 GCCTTGCTGAGATGAGTGAGAATGAGAAGAGCGGATTCATCAGCCTTGTTTCACGTTACC 230
| ||| |||||||||| |||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 130 GACTTACTGAGATGAGCGAGAATGAGAAGAGTGGATTCATCAACCTCGTTTCACGTTACC 189
Query 231 TGAGCGGTGAGGCACAGCACATTGAGTGGAGTAAGATCCAGACACCTACTGATGAAATCG 290
| || ||||| || ||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 190 TCAGTGGTGAAGCCCAGCACATTGAATGGAGCAAGATCCAGACACCTACTGATGAAATTG 249
Query 291 TTGTTCCCTACGAGAAAATGGCTTCCGTCTCCCAAGATGTTTCCGAGACCAAGA-ATCTG 349
||||||| || || ||||||||| |||||| |||||| |||||||||||| | |||||
Sbjct 250 TTGTTCCTTATGATAAAATGGCTAACGTCTCTGAAGATGCTTCCGAGACCAA-ATATCTG 308
Query 350 TTGGACAAACTTGTTGTGTTAAAGCTTAATGGAGGTCTTGGG-ACAACAATGGGATGCAC 408
|||||||| ||||||||| | ||||||||||||||| ||||| || ||||||||||||||
Sbjct 309 TTGGACAAGCTTGTTGTGCTGAAGCTTAATGGAGGT-TTGGGAACCACAATGGGATGCAC 367
Query 409 TGGCCCCAAGTCGGTTATCGAAGTTCGTGACGGTTTGACATTTCTTGATCTGATTGTTAT 468
||| || || |||||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 368 TGGTCCAAAATCGGTTATTGAAGTTCGTGATGGTTTGACATTTCTTGACCTGATTGTTAT 427
Query 469 CCAGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCGTTGGTTCTCATGAACTC 528
|||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 428 CCAGATTGAGAATCTCAACAACAAGTATAACTGCAAGGTTCCTTTGGTTCTTATGAACTC 487
Query 529 ATTTAATACACATGATGACACACAAAAGATTGTGGAAAAGTACACCCACTCAAATGTTGA 588
||| ||||||||||||||||||||||||||||||||||| |||||| | |||||||||||
Sbjct 488 ATTCAATACACATGATGACACACAAAAGATTGTGGAAAAATACACCAAGTCAAATGTTGA 547
Query 589 CATTCACACATTTAACCAGAGCAAATATCCCCGTGTTGTGGCAGATGAGTTTGTGCCATG 648
|||||||| ||||| |||||||| ||||| |||||||| || |||||||||||||| ||
Sbjct 548 TATTCACACTTTTAATCAGAGCAAGTATCCTCGTGTTGTTGCTGATGAGTTTGTGCCGTG 607
Query 649 GCCCAGCAAGGGAAAGACCGACAAGGAGGGCTGGTATCCTCCTGGTCATGGTGATGTATT 708
||| ||||| |||||||| |||||||| || ||||||||||| ||||| |||||||||||
Sbjct 608 GCCAAGCAAAGGAAAGACTGACAAGGATGGATGGTATCCTCCCGGTCACGGTGATGTATT 667
Query 709 CCCAGCCCTCATGAACAGTGGAAAGCTCGATACTTTCTTATCACAGGGTAAGGAATACGT 768
|||| | |||||||||||||| ||||| ||| | |||||||||||||||||||| || ||
Sbjct 668 CCCATCTCTCATGAACAGTGGCAAGCTTGATGCGTTCTTATCACAGGGTAAGGAGTATGT 727
Query 769 GTTTGTTGCCAATTCAGACAACTTGGGTGCCATCGTTGACTTAACAATCCTGAAGCATTT 828
||| | ||||| |||||||||||||| || ||||||||||||| |||| ||||||| |
Sbjct 728 GTTCATCGCCAACTCAGACAACTTGGGCGCAATCGTTGACTTAAAAATCTTGAAGCACCT 787
Query 829 GATCCAGAACAAGAACGAGTACTGCATGGAAGTTACGCCCAAAAC-CTTAGCTGATGTAA 887
|||||||||||| || |||||||| ||||| ||||| |||||||| | ||||||||||||
Sbjct 788 GATCCAGAACAAAAATGAGTACTGTATGGAGGTTACACCCAAAACAC-TAGCTGATGTAA 846
Query 888 AGGGAGGAACTCTCATTTCTTATGAAGGCAAAGTCCAGCTTCTGGAGATTGCTCAGGTTC 947
|||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||
Sbjct 847 AGGGAGGAACTCTCATTTCTTACGAAGGAAAAGTACAGCTTTTGGAGATTGCTCAGGTTC 906
Query 948 CGGATGAACATGTCAATGAATTCAAATCAATTGAGAAGTTCAAGATATTCAACACAAACA 1007
| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||
Sbjct 907 CTGATGAACATGTAAATGAATTCAAATCAATTGAGAAATTCAAGATTTTCAACACCAACA 966
Query 1008 ACTTATGGGTTAACTTGAAGGCCATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGG 1067
|| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 967 ACCTATGGGTGAACTTGAAAGCCATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGG 1026
Query 1068 AGATCATTCCAAACCCAAAGGAAGTTGATGGAGTCAAAATTCTTCAACTGGAAACTGCAG 1127
||||||| |||||||| ||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct 1027 AGATCATCCCAAACCCGAAGGAAGTTGACGGAGTCAAAGTTCTTCAGCTGGAAACTGCAG 1086
Query 1128 CTGGTGCTGCGATAAGGTTCTTTGACAATGCTATCGGTGTTAATGTACCTCGTTCACGGT 1187
||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||
Sbjct 1087 CTGGTGCTGCGATAAGGTTTTTTGATAATGCAATTGGTGTGAATGTACCTCGGTCACGGT 1146
Query 1188 TCTTGCCAGTGAAGGCAAGCT-CAGACTTGCTGCTCGTCCAGTCTGATCTCTACACGTTA 1246
|||||||||||||||||| || |||||||||| || || || || ||||| ||||| |
Sbjct 1147 TCTTGCCAGTGAAGGCAA-CTTCAGACTTGCTTCTTGTTCAATCGGATCTGTACACACTC 1205
Query 1247 GTTGATGGCTTCGTTACCCGAAACAAAGCTAGAACTAACCCCTCAAACCCATCAATTGAA 1306
|| |||||||| || || |||||||||||||||| |||||| |||||||| | || ||
Sbjct 1206 GTAGATGGCTTTGTCACAAGAAACAAAGCTAGAACAAACCCCACAAACCCAGCGATCGAG 1265
Query 1307 TTGGGACCTGAGTTCAAGAAGGTGGCTAATTTC-TTGAGCCGGTTTAAGTCCATTCCTAG 1365
|||||||| || ||||| ||||| || | |||| || |||||||| |||||||| || ||
Sbjct 1266 TTGGGACCCGAATTCAAAAAGGTAGCGAGTTTCCTT-AGCCGGTTCAAGTCCATCCCGAG 1324
Query 1366 TATAGTCGAGCTCGACAGCCTTAAGGTGTCTGGGGATGTCTGGTTTGGCTCTT-CGGTTG 1424
|||||| |||||||| || |||||||| || || ||||| ||||||||||| || |||
Sbjct 1325 TATAGTTGAGCTCGATAGTCTTAAGGTCTCAGGTGATGTTTGGTTTGGCTCCGGCG-TTG 1383
Query 1425 TTCTCAAGGG-AAAGGTAACTGTGACTGCAAAATCCGGTG--TGAAGCTCGAAATTCCGG 1481
|||||||||| |||| | || || | ||||| |||| | | || || ||||| || |
Sbjct 1384 TTCTCAAGGGCAAAG-TGACAGTAAAGGCAAACGCCGG-GACTAAA-CTTGAAATCCCTG 1440
Query 1482 ACAGGGCCGTGGTCGACAACAAGAACATCAATGGTCCAGAAGACCTCTGAA 1532
||| |||||| |||| || ||| ||||||| |||||||| || || ||||
Sbjct 1441 ACAATGCCGTGCTCGAGAATAAGGACATCAACGGTCCAGAGGATCTGTGAA 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89206368465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5