BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477575

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03272.1 | Symbols:  | Protein of unknown function (DUF1278)...   490    5e-138


> AT3G03272.1 | Symbols:  | Protein of unknown function (DUF1278) 
| chr3:763657-764437 REVERSE LENGTH=781
Length=781

 Score =  490 bits (265),  Expect = 5e-138
 Identities = 366/411 (89%), Gaps = 21/411 (5%)
 Strand=Plus/Plus

Query  1    ATGATGAAACCAATTCCTCTCGTACTCGCCCTTCTCCTCTCATCATCTTTTGCACCTCTA  60
            |||||||||||| || |||| |||||||  ||| |||||||||||||||| |||     |
Sbjct  243  ATGATGAAACCATTTTCTCTAGTACTCGTTCTTGTCCTCTCATCATCTTTAGCA-----A  297

Query  61   GCCGCAACCGCATTCTCCTTATTCCCGTTTCCGTTCCCGCTTCCACTTCCATTTTCGCTC  120
            |  |||||||||| |||||||||  |   | ||    | | |||||||||||||||||||
Sbjct  298  G-TGCAACCGCATCCTCCTTATT--C---T-CG----C-C-TCCACTTCCATTTTCGCTC  344

Query  121  CCTTCCATCTTCGGTGGAATTATCGGTAACAATGATAATAGCAAGTTAGCTAGGATGTGT  180
             |||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||
Sbjct  345  TCTTCCATCTTCGGTGGGATTATCGGTAACAGTGATAATAGCGAGTTAGCTAGGATGTGT  404

Query  181  TTTCCAGACCTAGGAGACGGAGAAGCCTGTGTGGCGGAAATCTTCGGTTCATTCTTTA-A  239
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  
Sbjct  405  TTTCCAGACCTAGGAGACGGAGAAGCCTGCGTGGCGGAAATCTTCGGTTCATTCTTTAGT  464

Query  240  CCGTCAAATCACGATAGGACCAGAATGTTGCAAGGCCATTGTTGAGATCGACGAAGACTG  299
            || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  465  CC-TCAAATTACGATAGGACCAGAATGTTGCAAGGCCATTGTTGAGATCGACGAAGACTG  523

Query  300  TACTCAAGCCATTTTCAAACCACTCAGCAATTCTTTCTTTAGTAGTTCTGTTAAGCAGTA  359
            | ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  524  TGCTCAAGCCATTTTTAAACCACTCAGCAATTCTTTCTTTAGTAGTTCTGTCAAGCAGTA  583

Query  360  TTGCACTTACATTAATAATTGATCGAAATTTGTTTTAGGTTTACTTTAGTG  410
            |||||||||||| |||| ||||| ||| ||| ||| |||||||||||||||
Sbjct  584  TTGCACTTACATCAATAGTTGATTGAATTTTCTTT-AGGTTTACTTTAGTG  633



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5