BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477581
Length=808
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03320.1 | Symbols: | RNA-binding ASCH domain protein | chr... 1101 0.0
> AT3G03320.1 | Symbols: | RNA-binding ASCH domain protein | chr3:781715-783464
FORWARD LENGTH=1067
Length=1067
Score = 1101 bits (596), Expect = 0.0
Identities = 727/789 (92%), Gaps = 13/789 (2%)
Strand=Plus/Plus
Query 1 AATTTTTCTTTATTAAGAGGCTTACCGATTCACGTTGACATTTTTGACGAAAATGGAGCA 60
||| |||||| |||||||||||| | |||||| | ||||||||||||||||||||
Sbjct 113 AATATTTCTTAATTAAGAGGCTT----A---ACGTTGGCGTTTTTGACGAAAATGGAGCA 165
Query 61 ACCAACGTCGCCGGGAACAAAGTCGGTGAATCTCCGAGAATGCATGGAGTCACTTCTACG 120
||||| |||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 166 ACCAATGTCGCCGGGAACGAAGTCGGTGGATCTCCGAGAATGCATGGAATCACTTCTCCG 225
Query 121 TTTTACG-CTGAGCTCTCATTTACACGAATCTGTTCCAAGTTTCGATCTTGACCTGACCA 179
||||| | ||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 226 TTTTA-GTCTGAGATCTCATTTAAACGAATCTGTTCCAAGTTTCGATCTTGACCTGACCA 284
Query 180 GAGATTTTTGCCTTCATCTCCTTGAGGAAGCGACAGATTCAACTGAAAAACCTGCGGTGT 239
|||||||||| ||||||||||||| |||||| ||||||||||| |||||| |||||||||
Sbjct 285 GAGATTTTTGTCTTCATCTCCTTGGGGAAGCTACAGATTCAACAGAAAAATCTGCGGTGT 344
Query 240 ATAAGCTTCTAGCAAGGGCTCTCTCTGAATGTCTAGCTTCCGAGGGTGATAACAATCCTA 299
| ||||||||||||| |||| | ||||||||||||||||||||||||||||| ||| |||
Sbjct 345 ACAAGCTTCTAGCAACGGCTTTGTCTGAATGTCTAGCTTCCGAGGGTGATAAAAATTCTA 404
Query 300 ACTTGGAAAAATACAGCAAATTGTTTCATGGCTTGGGACATGACTTAATAAATATGCTGA 359
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||
Sbjct 405 ACTTGGAAAAATACAGCAAACTGATTCATGGCTTGGGATATGACTTAATAAATATGTTGA 464
Query 360 AGAAGGTAAACTTTGAGCTTCATGTCCAAGAGCCTTACTTCACCCAATTGAAAGATGGTC 419
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AGGAGGTGAACTTTGAGCTTCATGTCCAAGAGCCTTACTTCACCCAATTGAAAGATGGTT 524
Query 420 TGAAAACTGTTGAAGGAAGATGTGCAGTGGGAGACTACATGAGGATCAGTTCAGGAGCTT 479
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||| ||
Sbjct 525 TGAAAACTGTTGAAGGAAGATGCGCAGTGGGAGACTACATGAGAATTAGTTCAGGAGATT 584
Query 480 TTATTTTATTCAATAAATGCTTGCTGCTTGAAGTTCAGGACGTTCATCATTATACTTCAT 539
|| |||| |||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 585 TTCTTTTGTTCAATAAATGCTTGCTGCTTGAAGTTCAGGACGTTCACCGTTATACTTCAT 644
Query 540 TCTCAGAAATGCTGATAA-TGGAGGGTCTTGACAAAGTTCTTCCTGGAGTTGAAAGTATA 598
||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 645 TCTCAGAAATGCTGA-AAGTGGAGGGTCTTGCCAAAGTTCTTCCTGGAGTTGAAAGTATA 703
Query 599 GAAGAAGGTGTTCAAGTTTATCGAAACTTTTACTCTGAAGAGAAGGAAAGAATGAACGGT 658
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 704 GAAGAAGGTGTTCAAGTTTACCGAAACTTTTATTCTGAAGAGAAGGAAAGAATGAACGGT 763
Query 659 GTTCTAGCAATTCATGTTGCGAAACCAGCTAATCAGCCTTATGCAGCTTTGGCAGGAGTA 718
||| |||| |||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 764 GTTGTAGCTATTCGTGTTGCAAAACCAGCTAATCAGCCTTCTGCAGCTTTGGCAGGAGTA 823
Query 719 TTGTCTGAACTGAAGTCCACTGGGATCAAAAGCCTGTTGGATGACTATACAGCCTGAG-T 777
||||||||||||||||||| |||||||||||||||||||||||| || ||||| || | |
Sbjct 824 TTGTCTGAACTGAAGTCCAGTGGGATCAAAAGCCTGTTGGATGAATACACAGC-TGGGGT 882
Query 778 TACCTCGTA 786
|||||||||
Sbjct 883 TACCTCGTA 891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39333337101
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5