BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477583
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03340.1 | Symbols: UNE6 | LUC7 related protein | chr3:78632... 2270 0.0
AT5G17440.1 | Symbols: | LUC7 related protein | chr5:5749762-5... 1173 0.0
> AT3G03340.1 | Symbols: UNE6 | LUC7 related protein | chr3:786320-790077
FORWARD LENGTH=1643
Length=1643
Score = 2270 bits (1229), Expect = 0.0
Identities = 1375/1445 (95%), Gaps = 11/1445 (1%)
Strand=Plus/Plus
Query 20 agagagagagagagagaACGAAGATGGATGCCATAAGGAAGCAGCTCGATGTACTCATGG 79
||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||
Sbjct 97 AGAGAGAGAGAGAGAGAACGACTATGGACGCTATAAGGAAGCAGCTTGATGTGCTCATGG 156
Query 80 GAGCGAACCGAAACGGCGACGTTCAGGAGGTGAATCGCAAATACTACGACCGTGATGTCT 139
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 157 GAGCTAACCGAAACGGCGACGTTCAGGAGGTGAATCGCAAATACTACGACCGTGATGTGT 216
Query 140 GTCGTCTTTACTTGTCCGGTCTCTGCCCTCACGATCTCTTCCAATTGACGAAAATGGATA 199
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 GTCGTCTTTACTTGTCTGGTCTCTGCCCTCACGATCTCTTCCAATTGACGAAAATGGATA 276
Query 200 TGGGACCTTGCCCAAAGGTGCACTCTTTGCAGCTTAGGAAAGAATATCGGGAAGCAAAGG 259
||||||| ||||||||||||||||||||||||||| |||||||||| || ||||||| ||
Sbjct 277 TGGGACCATGCCCAAAGGTGCACTCTTTGCAGCTTCGGAAAGAATACCGAGAAGCAAGGG 336
Query 260 CAAAAGGTGTTGATAACTACGACAGGGAATTGGAAGATGCCATAGACAGACTTATCGTTG 319
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 337 CAAAAGGTGTTGATAACTACGACAGGGAATTGGAAGATGCCATAGACAGGCTTATCGTTG 396
Query 320 AGTGTGATAGGAAGATTGGTAGGGCCCTTAAGCGTCTTCAAGAAGAGGACGCCAAAGCTG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 AGTGTGATAGGAAGATTGGTAGGGCCCTTAAGCGTCTTCAAGAAGAGGACGCCAAAGCTG 456
Query 380 CCATTGCCATTTCAGTCTCTGAAGTCACTCAGTCTCCTGAAATTCTTGAGTTATCGGAGA 439
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 457 CCATTGCCATTTCTGTCTCTGAAGTCACTCAGTCGCCTGAAATTCTCGAGTTATCGGAGA 516
Query 440 AAATCAAAGAGAAGATGAAGGAAGCAGATATCCACGATCTTGAAGGCAAAATGGATCTTA 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 AAATCAAAGAGAAGATGAAGGAAGCAGATATCCACGATCTTGAAGGCAAAATGGATCTTA 576
Query 500 AGATTAGAGCTCTTGAGTTAGTCGAAGAAATGAGGACCAAGAGAGCTGACCAGCAGGCGG 559
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 577 AGATTAGAGCTCTTGAGTTAGTCGAAGAGATGAGGACCAAGAGAGCTGACCAACAGGCGG 636
Query 560 TGCTGCTGTTGGAAGCCTTTAACAAAGATAGAGCATCCTTGCCACAGCCTGTTCCAGCTC 619
|| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 637 TGTTGCTGTTGGAAGCCTTCAACAAAGATAGAGCATCCTTGCCACAGCCCGTTCCAGCTC 696
Query 620 AACCACCATCTTCCGCATTACCTACACCAGATCCTCGCACTCAAGAAATGATAAATGAGA 679
||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 697 AACCACCATCTTCCGAATTACCTCCACCGGATCCTCGCACTCAAGAAATGATAAATGAGA 756
Query 680 AACTGAAGAAGGCAGAAGATCTTGGTGAACAAGGAATGGTTGATGAAGCACAGAAAGCAC 739
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 757 AACTGAAGAAGGCAGAAGATCTTGGTGAACAAGGAATGGTTGATGAAGCCCAGAAAGCCC 816
Query 740 TGGAAGAGGCTGAAGCTCTTAAGAAGCTTACAGTTAGACGAGAACCTGCAGCAGATTCAA 799
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 817 TGGAAGAGGCTGAAGCTCTTAAGAAGCTTACAGTTAGACGAGAACCTCCAGCAGATTCAA 876
Query 800 CGAAGTACACTGCTGTTGATGTGCGCATTACGGACCAAAAGTTGCGTCTATGTGACATAT 859
|||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 877 CGAAGTACACCGCTGTTGATGTGCGCATCACAGACCAAAAGTTGCGTCTATGTGACATAT 936
Query 860 GTGGAGCATTCTTGAGCGTCTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGTGGGA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 937 GTGGAGCATTCTTGAGCGTCTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGGGGGA 996
Query 920 AGCTTCATTTAGGATACATGCTAGTCCGGGACAAATTAACTGAGCTTCTGGATGAGAAGG 979
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 997 AGCTTCATCTAGGATACATGCTAGTCCGGGACAAATTAACAGAGCTTCTGGATGAGAAGG 1056
Query 980 CCAATTTACGCAATGAAAGATCAAAGGAACGGAACAGTAAGGAGAGGGAATCAAGTAAAG 1039
||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1057 CCAATATACGCAAGGAAAGATCAAAGGAACGGAACAGTAAGGAGAGAGAATCAAGTAAAG 1116
Query 1040 ACCGAGAGAAAGAGCGAGGATCTAGTCATGAACGTCGAAGAGATTATGATCGCAGGAGTA 1099
||||||||||||| | || | |||||| ||||| ||||||||||||||||||||||||||
Sbjct 1117 ACCGAGAGAAAGAACAAGAAACTAGTCGTGAACATCGAAGAGATTATGATCGCAGGAGTA 1176
Query 1100 GAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGGGACTATGATCGGTCAC 1159
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1177 GAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGAGACTATGATCGGTCAC 1236
Query 1160 ACTCAAGAAGCAGACGTAGGTCACGCTCACGGTCCAGGTCCAGAGACAGACCAAGGGACT 1219
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1237 ACTCAAGAAGCAGACGTAGGTCACGCTCACGGTCCAGGTCAAGAGATAGACCAAGGGACT 1296
Query 1220 ATGATCGCCACAGGCGTCACAACCGCTACTAG---G-TCGGTCTTGCTGTCTAACAGGGT 1275
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1297 ATGATCGCCACAGGCGTCACAACCGCTACTAGATCGATCGGTCTTGCTGTCTAACAGGGT 1356
Query 1276 TTACAAGTTACAAATGGTTTTAGGATCCATCACCGAAACtttttt-tGTCTACATGTATG 1334
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1357 TTACAAGTTACAAATGGTTTTAGGATCTATCACCGAAACTTTTTTCTGTCTACATGTATG 1416
Query 1335 TTGCTGAAGTTTGGTAGATGAGCTTTCAGAAAAATTTCACATCATTTTCTTTTACCACCA 1394
|| || |||| || |||||||| |||||||||| ||||||||| |||||||||||||| |
Sbjct 1417 TTACTCAAGTATGTTAGATGAG-TTTCAGAAAA-TTTCACATCTTTTTCTTTTACCACAA 1474
Query 1395 ACTAAAGACTTGAAAGAAGCAAGAAGATGTTTTATTGTTTTT-CT-CATCTGAGAAGCGT 1452
|||||||||||| ||||| ||||| | || ||||| |||||| | ||||||||||||||
Sbjct 1475 ACTAAAGACTTGGAAGAAACAAGATG-TGGTTTAT-GTTTTTACCACATCTGAGAAGCGT 1532
Query 1453 GTATG 1457
|||||
Sbjct 1533 GTATG 1537
> AT5G17440.1 | Symbols: | LUC7 related protein | chr5:5749762-5753643
FORWARD LENGTH=1530
Length=1530
Score = 1173 bits (635), Expect = 0.0
Identities = 1053/1251 (84%), Gaps = 44/1251 (4%)
Strand=Plus/Plus
Query 25 gagagagagagaACGAAGATGGATGCCATAAGGAAGCAGCTCGATGTACTCATGGGAGCG 84
|||||||||| |||||||||||| || || |||||||| |||||||| |||||||||||
Sbjct 70 GAGAGAGAGATAACGAAGATGGACGCTATGAGGAAGCAACTCGATGTGCTCATGGGAGCT 129
Query 85 AACCGAAACGGCGACGTTCA-GGAGGTGAATCGCAAATACTACGACCGTGATGTCTGTCG 143
||| |||||||||| | ||| ||||| |||||||||||||||||||| ||||| || ||
Sbjct 130 AACAGAAACGGCGATG-TCACTGAGGTCAATCGCAAATACTACGACCGCGATGTTTGCCG 188
Query 144 TCTTTACTTGTCCGGTCTCTGCCCTCACGATCTCTTCCAATTGACGAAAATGGATATGGG 203
||||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 189 TCTTTACCTCTCTGGTCTCTGCCCTCACGAGCTTTTCCAATTGACGAAAATGGATATGGG 248
Query 204 ACCTTGCCCAAAGGTGCACTCTTTGCAGCTTAGGAAAGAATATCGGGAAGCAAAGGCAAA 263
||||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 249 TCCTTGCCCAAAGGTGCACTCTTTGCAGCTGAGGAAAGAATATAAAGATGCAAAGGCAAA 308
Query 264 AGGTGTTGATAACTACGACAGGGAATTGGAAGATGCCATAGACAGACTTATCGTTGAGTG 323
||||||||| ||||| || ||||||||||||||||| ||||| || ||||| ||||||||
Sbjct 309 AGGTGTTGACAACTATGATAGGGAATTGGAAGATGCGATAGATAGGCTTATTGTTGAGTG 368
Query 324 TGATAGGAAGATTGGTAGGGCCCTTAAGCGTCTTCAAGAAGAGGACGCCAAAGCTGCCAT 383
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 369 TGATAGGAAGATTGGTAGGGCTCTTAATCGTCTTCAAGAAGAGGATGCCAAAGCTGCCAT 428
Query 384 TGCCATTTCAGTCTCTGAAGTCACTCAGTCTCCTGAAATTCTTGAGTTATCGGAGAAAAT 443
||| ||||| ||| | ||| | |||||||| |||||||||||||| |||||| || ||||
Sbjct 429 TGCAATTTCTGTCACAGAATTTACTCAGTCACCTGAAATTCTTGAATTATCGAAGCAAAT 488
Query 444 CAAAGAGAAGATGAAGGAAGCAGATATCCACGATCTTGAAGGCAAAATGGATCTTAAGAT 503
|||||| ||||||||||||||||| | ||||||||||||||||||| ||||| |||||
Sbjct 489 CAAAGAAAAGATGAAGGAAGCAGACCTGCACGATCTTGAAGGCAAAACAGATCTGAAGAT 548
Query 504 TAGAGCTCTTGAGTTAGTCGAAGAAATGAGGACCAAGAGAGCTGACC-AGCAGGCGGTGC 562
|||||||||||||||||| ||||| |||||||| ||||||||||||| | ||||| ||||
Sbjct 549 TAGAGCTCTTGAGTTAGTTGAAGAGATGAGGACGAAGAGAGCTGACCTA-CAGGCTGTGC 607
Query 563 TGCTGTTGGAAGCCTTTAACAAAGATAG-AGCATCCTTGCCACAGCCTGTTCCAGCTCAA 621
| |||||||| ||||||||||||||||| | ||||||||| |||| | |||||||||||
Sbjct 608 TACTGTTGGATGCCTTTAACAAAGATAGGA-CATCCTTGCAACAGGCAGTTCCAGCTCAG 666
Query 622 CCACCATCTTCCGCATTACCTACACCAGATCCTCGCACTCAAGAAATGATAAATGAGAAA 681
| |||| || | | |||||| | || |||||||| |||||||||||||| ||||| |||
Sbjct 667 CAACCAGCTGCAACTTTACCTCCGCCCGATCCTCGTACTCAAGAAATGATCAATGAAAAA 726
Query 682 CTGAAGAAGGCAGAAGATCTTGGTGAACAAGGAATGGTTGATGAAGCACAGAAAGCACTG 741
|| ||||| |||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 727 CTAAAGAAAGCAGAAGAGCTTGGTGAACAAGGGATGGTTGATGAAGCGCAGAAAGCACTA 786
Query 742 GAAGAGGCTGAAGCTCTTAAGAAGCTTACAGTTAGACGAGAACCTGCAGCAGATTCAACG 801
|||||||| |||||||||||||||||||| | ||||| |||||||| || ||||||||
Sbjct 787 GAAGAGGCGGAAGCTCTTAAGAAGCTTACTGCTAGACAAGAACCTGTAGTGGATTCAACC 846
Query 802 AAGTACACTGCTGTTGATGTGCGCATTACGGACCAAAAGTTGCGTCTATGTGACATATGT 861
||||||||||||| ||| ||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 847 AAGTACACTGCTGCTGACGTGCGCATTACAGACCAGAAGCTGCGTCTATGTGACATATGC 906
Query 862 GGAGCATTCTTGAGCGTCTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGTGGGAAG 921
|||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 907 GGAGCATTTTTGAGCGTCTATGACAGTGATCGTCGGTTAGCTGATCATTTTGGAGGGAAG 966
Query 922 CTTCATTTAGGATACATGCT-AGTCCGGGACAAATTAACTGAGCTTCTGGATGAGAAGGC 980
||||| || || |||||||| | |||| |||||||| | ||||||| ||| ||||||
Sbjct 967 CTTCACTTGGGTTACATGCTGA-TCCGCGACAAATTGGCAGAGCTTCAGGAGGAGAAGAA 1025
Query 981 CAAT-TTACGCAATGAAAGA-TCAAAGGAACGGA-A-CA--GTA-AGGAG-AG-G-G--A 1028
||| || | ||| ||| | || ||| || ||| | || | | ||||| || | | |
Sbjct 1026 CAAAGTT-CACAAGGAACGGGTCGAAGAAA-GGAGATCAAAGGAGAGGAGTAGAGAGCGA 1083
Query 1029 -A-TCAAGTAAAGACCGAGAGAAAGAGCGAGGATCTAGTCATGAACGTCGAAGAGAT-TA 1085
| |||||||||||| ||||| ||| ||| || | | ||| || |||||||| |
Sbjct 1084 GAATCAAGTAAAGAC--AGAGACGGAG-GAG-ATA-AC-CGTGACCGAGGAAGAGATGT- 1136
Query 1086 TGATCGCAGGAGTAGAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGGGA 1145
||| ||||||||||||||||| || ||||||||||||| | || ||||| ||||| |
Sbjct 1137 TGACCGCAGGAGTAGAGATCGTGACAGGCACCATGACC---ACCGAGAACATGACAGAAA 1193
Query 1146 CTATGATCGGTCACACT--CAA-GAAGCA-GACGTAGGT-CACGCTCACGGTCCAGGTCC 1200
|||| ||| ||||| | | | || || || | || || | ||||||||| ||||
Sbjct 1194 CTATAATCAGTCACG-TGGCTATGACTCAAGAAGCCGGCGCA-GTTCACGGTCCCGGTCT 1251
Query 1201 AGAGACAGACCAAGGGA-CTATGATCGCCACAGGCGTCACAACCGCTACTA 1250
|| || ||||| ||||| | ||||||||| ||| || || ||||||||||
Sbjct 1252 AGGGAAAGACCGAGGGATC-ATGATCGCCGCAGACGCCATGACCGCTACTA 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71836979895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5