BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477584

Length=442
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03341.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   514    3e-145


> AT3G03341.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:790130-790648 
REVERSE LENGTH=519
Length=519

 Score =  514 bits (278),  Expect = 3e-145
 Identities = 308/322 (96%), Gaps = 4/322 (1%)
 Strand=Plus/Plus

Query  1    ATCTTCCACTTCTTGTGCTACTCATATTCCATACATCATATCCCTATAACATCAACAAAC  60
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATCTTCCACTTCTTGTTCTACTCATATTCCATACATCATATCCCTATAACATCAACAAAC  60

Query  61   ATTTCATCTGTTTGATCAGtttttttAACCAACGATGATTCCGATATGCGTGCAATGCGG  120
            |||||||| | ||||||||  ||||||||||||||||||||||||||||||||| |||||
Sbjct  61   ATTTCATCGGCTTGATCAG--TTTTTAACCAACGATGATTCCGATATGCGTGCAGTGCGG  118

Query  121  AACAGGCGGAAACCCTTGTAGATGCAAAGTGGTAGGACCGACGTTAGGGCTTGTGGCGTT  180
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  AACGGGCGGAAACCCTTGTAGATGCAAAGTGGTAGGACCGACGTTAGGGCTTGTGGCGTT  178

Query  181  TGTAGCAGCCGGAATAGTGGAATGGCCGGTCGGAGCTTTGGTTTATATCTTTAAACACGC  240
            |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||
Sbjct  179  TGTAGCAGCCGGAATAGTTGAATGGCCGGTCGGAGCATTGGTTTATATCTTTAAGCACGC  238

Query  241  -AAAGGGTCGACGCATTATGGGTCATCCGGCCACCCATGTTTATCCCAAAGTCTCTCGTT  299
             ||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  239  CAAAGG-TCGCCGCATTATGGGTCATCCGGCCACCCATGTTTATCCCAAGGTCTCTCGTT  297

Query  300  CCATTCCCATATGATTATGATG  321
            ||||||||||||||||||||||
Sbjct  298  CCATTCCCATATGATTATGATG  319



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21011919082


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5