BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477588 Length=931 Score E Sequences producing significant alignments: (Bits) Value AT3G03420.1 | Symbols: | Ku70-binding family protein | chr3:81... 1290 0.0 > AT3G03420.1 | Symbols: | Ku70-binding family protein | chr3:812448-814027 FORWARD LENGTH=1047 Length=1047 Score = 1290 bits (698), Expect = 0.0 Identities = 898/984 (91%), Gaps = 56/984 (6%) Strand=Plus/Plus Query 1 GCCGTCAAAATCGATTCAAAGCAAACCGGAGATTGAATGGAAGATGCAGCTGCTCCGAAT 60 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 44 GCCGTCAAAATCGATTCAAAGCGAACCAGAGATTGAATGGAAGATGCAGCTGCTCCGAAT 103 Query 61 TCTGGATCCGAATTTAACCCAGGAGCAAGACGCGGCAAATCTATCGATGAATGCCAAGAC 120 || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 104 TCAGGATCCGAATTTAATCCAGGAGCAAGACGCGGCAAATCTATCGATGAATGCCAAGAC 163 Query 121 ATGATTCGTAGGAGTTTCCGAAACCCAATTGTGAAGTTTCTCATGGAGCAAATGGAGAAA 180 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 164 ATGATTCGTAGGAGTTTCCGAAACCCAATAGTGAAGTTTCTGATGGAGCAAATGGAGAAA 223 Query 181 TCTGGGTGTAGAGTTGGTGATAATTTCGTTAAGGCTGTTGTTTGTACTGGACCTGTAGCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 TCTGGGTGTAGAGTTGGTGATAATTTCGTTAAGGCTGTTGTTTGTACTGGACCTGTAGCT 283 Query 241 GGAGGTTACACTAAAGGAAGAGGGATTACTGTCTGCAGTAACTATTTGACCATTCAAGAT 300 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 284 GGAGGTTACACTAAAGGAAGAGGGATAACTGTCTGCAGTAACTATCTGACCATTCAAGAT 343 Query 301 GAAGTGAACCAAGTAGTTATACATGAGTTGATTCATGCTTATGACGAATGCCGAGCCAAG 360 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 344 GAAGTGAACCAAGTAGTTATACATGAGTTGATTCATGCTTATGACGAGTGCCGAGCCAAG 403 Query 361 AATTTGGATTGGACTAATTGTGCTCATCATGCTTGCAGCGAGGTGATTCGTGCAGGTCAT 420 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 404 AATTTGGATTGGACTAATTGTGCTCATCATGCTTGCAGCGAG---ATTCGTGCAGGTCAT 460 Query 421 CTAAGCGGCGATTGCCATTTCAAGAGAGAACTTTTGCGGGGTTTCATTAAATTAAGAGGG 480 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 461 CTAAGCGGTGATTGCCATTTCAAGAGAGAACTTTTGCGCGGTTTCATTAAATTAAGAGGG 520 Query 481 CATGAACAAGAATGTATAAAAAGAAGAGTGTTGAAATCGCTTCGTGGCAACCCGTATTGC 540 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 521 CATGAACAAGAATGTATAAAAAGAAGAGTGTTGAAATCACTTCGTGGCAACCCGTATTGC 580 Query 541 TCGGAAGTAGCTGCTAAAGATGCGATGGAAGCAGTGTGGGATACTTGTTACAATGACACT 600 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 581 TCGGAAGTAGCTGCTAAAGACGCGATGGAAGCAGTGTGGGATACTTGTTACAATGACACT 640 Query 601 AAACCTTTTGATAGAGCTCCTTGAAGGTAGTAAGTCTATTT----T-------G-CTT-- 646 || |||||||||||||||||||||||||| ||||||||||| | | ||| Sbjct 641 AAGCCTTTTGATAGAGCTCCTTGAAGGTAATAAGTCTATTTACACTCTCAAAAGACTTAT 700 Query 647 -----C---AAAGTTATGTGTTCAACTTCATCTTTGAAGATCGATATAAAGCCGGAAAAA 698 | ||||||||| ||||||||||||||||||||||||| |||||||| |||||| Sbjct 701 GTTTGCTTCAAAGTTATGAGTTCAACTTCATCTTTGAAGATCGACATAAAGCCAGAAAAA 760 Query 699 A--CTGTTGGATTCAGCCATTGATTTTTTCCCCATGTATTTCTCACAATCCAACCTTTTT 756 | ||||||||||||||| |||||| | ||||||||||||||| ||||||||||||||| Sbjct 761 AAACTGTTGGATTCAGCCGTTGATTATCCCCCCATGTATTTCTCTCAATCCAACCTTTTT 820 Query 757 GGCCCAGTTAAACGATAG--TATTTGTTTAGATTCTTTATATTGTTGTTGGATACAAA-- 812 |||| ||| ||||||||| ||||||||||||||||||| ||||||||| || ||||| Sbjct 821 GGCCAAGTCAAACGATAGAGTATTTGTTTAGATTCTTTACATTGTTGTTTGAAACAAAGG 880 Query 813 AA----T-T--T------T---GATTTCAAGTGGATTTTGCTTGAAAGTATAATTTTGAT 856 || | | | | |||||||||||||||||||||||||||||||||||||| Sbjct 881 AAAAGGTCTAATACACAATCTTGATTTCAAGTGGATTTTGCTTGAAAGTATAATTTTGAT 940 Query 857 TAATGGATTTGTATTTTACATCACACT--GGA-T--G-A---ATAAGTAGCTCTGAATCT 907 | ||||||||||||||||||||||||| ||| | | | |||||||||||||||||| Sbjct 941 TTATGGATTTGTATTTTACATCACACTCTGGAGTCTGGAGGGATAAGTAGCTCTGAATCT 1000 Query 908 AACAGTGCAATAGAAAGTTGATAC 931 ||||||| |||||||||||||||| Sbjct 1001 AACAGTGTAATAGAAAGTTGATAC 1024 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45512137182 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5