BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477588
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03420.1 | Symbols: | Ku70-binding family protein | chr3:81... 1290 0.0
> AT3G03420.1 | Symbols: | Ku70-binding family protein | chr3:812448-814027
FORWARD LENGTH=1047
Length=1047
Score = 1290 bits (698), Expect = 0.0
Identities = 898/984 (91%), Gaps = 56/984 (6%)
Strand=Plus/Plus
Query 1 GCCGTCAAAATCGATTCAAAGCAAACCGGAGATTGAATGGAAGATGCAGCTGCTCCGAAT 60
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 44 GCCGTCAAAATCGATTCAAAGCGAACCAGAGATTGAATGGAAGATGCAGCTGCTCCGAAT 103
Query 61 TCTGGATCCGAATTTAACCCAGGAGCAAGACGCGGCAAATCTATCGATGAATGCCAAGAC 120
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 TCAGGATCCGAATTTAATCCAGGAGCAAGACGCGGCAAATCTATCGATGAATGCCAAGAC 163
Query 121 ATGATTCGTAGGAGTTTCCGAAACCCAATTGTGAAGTTTCTCATGGAGCAAATGGAGAAA 180
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 164 ATGATTCGTAGGAGTTTCCGAAACCCAATAGTGAAGTTTCTGATGGAGCAAATGGAGAAA 223
Query 181 TCTGGGTGTAGAGTTGGTGATAATTTCGTTAAGGCTGTTGTTTGTACTGGACCTGTAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 TCTGGGTGTAGAGTTGGTGATAATTTCGTTAAGGCTGTTGTTTGTACTGGACCTGTAGCT 283
Query 241 GGAGGTTACACTAAAGGAAGAGGGATTACTGTCTGCAGTAACTATTTGACCATTCAAGAT 300
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 284 GGAGGTTACACTAAAGGAAGAGGGATAACTGTCTGCAGTAACTATCTGACCATTCAAGAT 343
Query 301 GAAGTGAACCAAGTAGTTATACATGAGTTGATTCATGCTTATGACGAATGCCGAGCCAAG 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 344 GAAGTGAACCAAGTAGTTATACATGAGTTGATTCATGCTTATGACGAGTGCCGAGCCAAG 403
Query 361 AATTTGGATTGGACTAATTGTGCTCATCATGCTTGCAGCGAGGTGATTCGTGCAGGTCAT 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 404 AATTTGGATTGGACTAATTGTGCTCATCATGCTTGCAGCGAG---ATTCGTGCAGGTCAT 460
Query 421 CTAAGCGGCGATTGCCATTTCAAGAGAGAACTTTTGCGGGGTTTCATTAAATTAAGAGGG 480
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 461 CTAAGCGGTGATTGCCATTTCAAGAGAGAACTTTTGCGCGGTTTCATTAAATTAAGAGGG 520
Query 481 CATGAACAAGAATGTATAAAAAGAAGAGTGTTGAAATCGCTTCGTGGCAACCCGTATTGC 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 521 CATGAACAAGAATGTATAAAAAGAAGAGTGTTGAAATCACTTCGTGGCAACCCGTATTGC 580
Query 541 TCGGAAGTAGCTGCTAAAGATGCGATGGAAGCAGTGTGGGATACTTGTTACAATGACACT 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 581 TCGGAAGTAGCTGCTAAAGACGCGATGGAAGCAGTGTGGGATACTTGTTACAATGACACT 640
Query 601 AAACCTTTTGATAGAGCTCCTTGAAGGTAGTAAGTCTATTT----T-------G-CTT-- 646
|| |||||||||||||||||||||||||| ||||||||||| | | |||
Sbjct 641 AAGCCTTTTGATAGAGCTCCTTGAAGGTAATAAGTCTATTTACACTCTCAAAAGACTTAT 700
Query 647 -----C---AAAGTTATGTGTTCAACTTCATCTTTGAAGATCGATATAAAGCCGGAAAAA 698
| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||
Sbjct 701 GTTTGCTTCAAAGTTATGAGTTCAACTTCATCTTTGAAGATCGACATAAAGCCAGAAAAA 760
Query 699 A--CTGTTGGATTCAGCCATTGATTTTTTCCCCATGTATTTCTCACAATCCAACCTTTTT 756
| ||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||
Sbjct 761 AAACTGTTGGATTCAGCCGTTGATTATCCCCCCATGTATTTCTCTCAATCCAACCTTTTT 820
Query 757 GGCCCAGTTAAACGATAG--TATTTGTTTAGATTCTTTATATTGTTGTTGGATACAAA-- 812
|||| ||| ||||||||| ||||||||||||||||||| ||||||||| || |||||
Sbjct 821 GGCCAAGTCAAACGATAGAGTATTTGTTTAGATTCTTTACATTGTTGTTTGAAACAAAGG 880
Query 813 AA----T-T--T------T---GATTTCAAGTGGATTTTGCTTGAAAGTATAATTTTGAT 856
|| | | | | ||||||||||||||||||||||||||||||||||||||
Sbjct 881 AAAAGGTCTAATACACAATCTTGATTTCAAGTGGATTTTGCTTGAAAGTATAATTTTGAT 940
Query 857 TAATGGATTTGTATTTTACATCACACT--GGA-T--G-A---ATAAGTAGCTCTGAATCT 907
| ||||||||||||||||||||||||| ||| | | | ||||||||||||||||||
Sbjct 941 TTATGGATTTGTATTTTACATCACACTCTGGAGTCTGGAGGGATAAGTAGCTCTGAATCT 1000
Query 908 AACAGTGCAATAGAAAGTTGATAC 931
||||||| ||||||||||||||||
Sbjct 1001 AACAGTGTAATAGAAAGTTGATAC 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45512137182
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5