BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477591
Length=1934
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03450.1 | Symbols: RGL2 | RGA-like 2 | chr3:819337-821406 R... 2748 0.0
> AT3G03450.1 | Symbols: RGL2 | RGA-like 2 | chr3:819337-821406
REVERSE LENGTH=2070
Length=2070
Score = 2748 bits (1488), Expect = 0.0
Identities = 1765/1891 (93%), Gaps = 49/1891 (3%)
Strand=Plus/Plus
Query 75 CCACCACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTGCT 134
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 170 CCACTACCAGCTTCTCGTTCCGGAGAAGGTCCTTCAATGGCGGATAAGAAGAAGGCTGAT 229
Query 135 GATG---ACAAC-A-A-CAACATGGATGATGAGCTTCTTGCTGTTCTTGGATACAAGGTT 188
|||| ||||| | | ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 230 GATGACAACAACAACAGCAACATGGATGATGAGCTTCTTGCTGTTCTTGGCTACAAGGTT 289
Query 189 CGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGAGCAACTTGAGATGGTCTTGTCT 248
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 290 CGATCTTCTGAGATGGCTGAAGTAGCACAGAAGCTTGAACAACTTGAGATGGTCTTGTCT 349
Query 249 AATGATGATGTTGGTTCTACTGTCTTAAACGACACTGTTCATTATAACCCATCTGATCTC 308
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 350 AATGATGATGTTGGTTCTACTGTCTTAAACGACTCTGTTCATTATAACCCATCTGATCTC 409
Query 309 TCTACCTGGGTCGAGAGCATGCTCTCGGAGCTTAACAACCCAACTTCTTCGGATCTTGAC 368
|||| |||||||||||||||||| || ||||| |||||||| |||||||||||||||||
Sbjct 410 TCTAACTGGGTCGAGAGCATGCTTTCTGAGCTGAACAACCCGGCTTCTTCGGATCTTGAC 469
Query 369 CCGACCCGAAGTTGTGTGGATAGATCCGAATACGATCTGC-GAGCAATTCCGGGTCTTTC 427
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 470 ACGACCCGAAGTTGTGTGGATAGATCCGAATACGATCT-CAGAGCAATTCCGGGTCTTTC 528
Query 428 TGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAAAGGATCCGACT 487
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 529 TGCGTTTCCAAAGGAAGAGGAAGTCTTTGACGAGGAAGCTAGCAGCAAGAGGATCCGACT 588
Query 488 CGGATCCTGGTGCGAACCGGCTGG-TGAGTCAACTCGGTCCGTGGTGGTCGTTGACTCTC 546
|||||| ||||||||| || | || ||||||||||||||||||||| ||||||||||||
Sbjct 589 CGGATCGTGGTGCGAATCGTC-GGACGAGTCAACTCGGTCCGTGGTGCTCGTTGACTCTC 647
Query 547 AGGAGACCGGAGTTAGACTCGTCCACGCGCTGGTGGCGTGCGCTGAGGCGATTCAGCAGG 606
||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||
Sbjct 648 AGGAGACCGGAGTTAGACTTGTCCACGCACTAGTGGCGTGCGCTGAGGCGATTCACCAGG 707
Query 607 AGAATCTCAACTTAGCTGACGCGCTCGTGAAACGCGTGGGAACACTCGCGGCTTCTCAAG 666
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 708 AGAATCTCAACTTAGCTGACGCGCTGGTGAAACGCGTGGGAACACTCGCGGGTTCTCAAG 767
Query 667 CTGGAGCTATGGGAAAAGTCGCTACGTATTTCGCTCAAGCTTTGGCTCGTCGTATTTACC 726
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 768 CTGGAGCTATGGGAAAAGTCGCTACGTATTTTGCTCAAGCCTTGGCTCGTCGTATTTACC 827
Query 727 GTGATTACACGGCGGAGACGGACGTCT-C-AGGC-G-G----C-TCCTTGGAAGAGGTTT 777
||||||||||||||||||||||||| | | ||| | | | || || ||||||||||
Sbjct 828 GTGATTACACGGCGGAGACGGACGTTTGCGCGGCGGTGAACCCATCTTTCGAAGAGGTTT 887
Query 778 TGCAGATGCACTTCTACGATTCTTGCCCTTACCTAAAATTCGCTCATTTCACGGCGAATC 837
|| |||||||||| ||||| |||||||||||||| || |||||||||||||||||||| |
Sbjct 888 TGGAGATGCACTTTTACGAGTCTTGCCCTTACCTGAAGTTCGCTCATTTCACGGCGAACC 947
Query 838 AAGCGATTCTAGAAGCTGTCGCGACGGCGCGTAGAGTTCACGTCATCGATTTAGGGCTTA 897
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 948 AAGCGATTCTAGAAGCTGTTACGACGGCGCGTAGAGTTCACGTCATTGATTTAGGGCTTA 1007
Query 898 ATCAAGGGATGCAATGGCCTGCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGTCCTC 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1008 ATCAAGGGATGCAATGGCCTGCTTTAATGCAAGCTTTAGCTCTCCGACCCGGTGGACCTC 1067
Query 958 CGTCGTTTCGTCTCACCGGAATCGGACCTCCGCAGAAGGAGAATTCAGATTCGCTTCAAC 1017
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1068 CGTCGTTTCGTCTCACCGGAATCGGACCACCGCAGACGGAGAATTCAGATTCGCTTCAAC 1127
Query 1018 AATTAGGTTGGAAATTAGCTCAATTCGCTCAAAACATGGGCGTTGAATTCGAATTCAAAG 1077
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1128 AGTTAGGTTGGAAATTAGCTCAATTCGCTCAGAACATGGGCGTTGAATTCGAATTCAAAG 1187
Query 1078 GTTTAGCCGCTGAGAGTTTATCGGATCTAGAACCCGAAATGTTCGAAACCCGACCTGATT 1137
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1188 GCTTAGCCGCTGAGAGTTTATCGGATCTTGAACCCGAAATGTTCGAAACCCGACCCGAAT 1247
Query 1138 CCGAAACCTTAGTGGTTAATTCGGTTTTTGAGCTTCACCGGTTATTAGCCCGATCCGGTT 1197
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1248 CTGAAACCTTAGTGGTTAATTCGGTATTTGAGCTCCACCGGTTATTAGCCCGATCCGGTT 1307
Query 1198 CAATAGAAAAGCTTCTCAACACGGTTAAAGCTGTTAAACCGAGTATTATAACGGTGGTTG 1257
|||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||||||
Sbjct 1308 CAATCGAAAAGCTTCTCAATACGGTTAAAGCTATTAAACCGAGTATCGTAACGGTGGTTG 1367
Query 1258 AGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 AGCAAGAAGCGAACCACAACGGAATCGTCTTCCTCGATAGGTTCAACGAAGCGCTTCATT 1427
Query 1318 ACTACTCGAGCCTGTTTGACTCGCTCGAAGACAGTGGTAGCTTACCGAGTCAAGACCGAG 1377
||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1428 ACTACTCGAGCTTGTTTGACTCGCTCGAAGACAGTTATAGTTTACCGAGTCAAGACCGAG 1487
Query 1378 TTATGTCAGAAGTGTACTTAGGGAGACAAATACTTAACGTTGTTGCGGCGGAAGGATCCG 1437
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 1488 TTATGTCAGAAGTGTACTTAGGGAGACAGATACTCAACGTTGTTGCGGCGGAAGGGTCCG 1547
Query 1438 ATCGGGTCGAGCGACACGAGACGG-TGGCACAGTGGAGGATCCGGATGAAATCCGCTGGG 1496
||||||||||||| |||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 1548 ATCGGGTCGAGCGGCACGAGACGGCTG-CACAGTGGAGGATTCGGATGAAATCCGCTGGG 1606
Query 1497 TTTGACCCGGTTCATCTCGGATCTAGCGCGTTCAAACAAGCGAGCATGCTTTTATCACTT 1556
||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1607 TTTGACCCGATTCATCTCGGATCTAGCGCGTTTAAACAAGCGAGTATGCTTTTATCGCTT 1666
Query 1557 TACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGTTGTTTAATGATTGGGTGG 1616
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1667 TACGCTACCGGAGATGGATACAGAGTTGAAGAAAATGACGGATGTTTAATGATAGGGTGG 1726
Query 1617 CAGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCCGGAGGTGGCGAGTCGCGG 1676
|||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1727 CAGACGCGACCACTCATCACAACCTCGGCGTGGAAACTCGCC-----TG---AGTCGCGG 1778
Query 1677 CGGTAGAGATGACTTGCATGAAACCGGGAAAAT-AATAAATGTTTTAAAAAATTAGGAAA 1735
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1779 CGGTAGAGATGACTCGCCTGAAACCGGGAAAAACAATAAATGTTTTAAAAAATTAGGAAA 1838
Query 1736 GGAGACCGTAACtttagt-atgtttttactttttaacccgaagtttttgtgtgtttaacc 1794
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1839 AGAGACCGTAACTTTAGTTATGTTTTTACTTTTTAACCCGAAGTTTTTGTGTGTTTAACC 1898
Query 1795 gttttgcctaaatgtttacaactttaTCTTTTTGGACCTTGTGCGTATCTTTGAGA---A 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1899 TTTTTGCCTAAATGTTTACAACTTTATCTTTTTGGACCTTGTGCGTATCTTTGAGAGTTA 1958
Query 1852 ------CGAGTAAAA--TCTTGTATCGTAGATCGAGCTGAGTAAGTTTTCAATAAATGTG 1903
||||||||| ||||||||||||||||||||| |||| |||||||||||||| |
Sbjct 1959 AGAGAACGAGTAAAAAATCTTGTATCGTAGATCGAGCTAAGTA-GTTTTCAATAAATG-G 2016
Query 1904 GAAGGATAATAAACGATTCTGTATGTTTTTT 1934
|||||||| ||||||||||||||||||
Sbjct 2017 -AAGGATAA----CGATTCTGTATGTTTTTT 2042
Score = 84.2 bits (45), Expect = 4e-15
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1 AAAACCTTACCAACCCATGAAGTAAAGTAAACTCCTTTCTTATAA 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 AAAACCTTACCAACCCATGAAGTAAAGTAAACTCCTTTCTTATAA 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95782639860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5