BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477595
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03490.1 | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3... 1338 0.0
AT5G17550.1 | Symbols: PEX19-2, AtPEX19-2 | peroxin 19-2 | chr5... 660 0.0
> AT3G03490.1 | Symbols: PEX19-1, AtPEX19-1 | peroxin 19-1 | chr3:830165-831888
REVERSE LENGTH=1013
Length=1013
Score = 1338 bits (724), Expect = 0.0
Identities = 873/941 (93%), Gaps = 26/941 (3%)
Strand=Plus/Plus
Query 11 TCTTCT-TCTCTCTCTGATATTCTTCCTAC-TCCCATATTCGAATTGTTTAGACAGGGAG 68
||| || ||||||||||||||||||| | | |||||| | ||||||||||| |||| ||
Sbjct 42 TCTCCTCTCTCTCTCTGATATTCTTCGT-CGTCCCATCTGCGAATTGTTTACACAGAGAT 100
Query 69 ATAGAGAGGAAGAGAAACGCCTAAGGAAAATGGCCAACAGTCACACCGATGACTTAGACG 128
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 101 ATAGAGAGGAAGAGAACCGCCTAAGGAAAATGGCGAACAGTCACACCGATGACTTGGACG 160
Query 129 AGCTTCTCGATAGTGCATTGGATGATTTCAAAGATCTCAATC-TT-TC-TCaaagaaatc 185
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 161 AGCTTCTCGATAGTGCATTGGATGATTTCAAAGATCTCAATCTTTCTCATCAAAGAAATC 220
Query 186 aaagggaagcgcaagaggagga-g--aagaagaagaaagaagagaCGGTTTTATTACCGA 242
|||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||||||
Sbjct 221 AAAGGGAAGCTCAAGAGGAGGAGGAAAAGAAGAGGAAAGAAGAGACGGTTTTATTACCGA 280
Query 243 GTGGAGTTCAAGGTCTTGGAATGGGATTACCAGATATGAGAAGCAAGAAAAAAGGAAAGC 302
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 281 GTGGAGTTCAAGGTCTTGGAATGGGATTACCAGATATGAGAAGCAAGAAGAGAGGAAAAC 340
Query 303 AAAAGGTTTCTAAAGAGGATCATGTTGCTGAAGCTCTTGATAAGCTTAGGGAACAAACTA 362
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 AAAAGGTTTCCAAAGAGGATCATGTTGCTGAAGCTCTTGATAAGCTTAGGGAACAAACTA 400
Query 363 GGGAAACTGTCAAAGGATTGGAATCCATTTCTTCTAAGCAGCTGCCAGCTTCTGATGATG 422
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 401 GGGAAACTGTCAAAGGATTGGAATCCATTTCTTCTAAGCAGCTGCCTGCTTCTGATGATG 460
Query 423 ATGGAATGGTTGAGGATTTTCTCAAGCAATTTGAGGATCTTACTGGATCCAAGGACTTGG 482
||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||
Sbjct 461 ATGGAATGGTTGAGGATTTTCTCAAACAATTCGAGGATCTTGCTGGATCTAAGGACTTGG 520
Query 483 AATCAATAGTCGAAACGATGATGCAACAGCTATTGTCGAAGGATATTCTTCACGAACCAA 542
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 521 AATCAATAGTCGAGACGATGATGCAACAGCTATTGTCGAAGGATATTCTCCACGAACCAA 580
Query 543 TGAAGGAGCTTGGTGCAAGATATCCGAAATGGCTAAAAGAGAATGAAGCCAGTCTAACCA 602
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 581 TGAAGGAGCTTGGCGCAAGATATCCGAAATGGCTAAAAGAGAATGAAGCCAGTCTAAGCA 640
Query 603 AAGAAGACTACAAACGTTATTCACAACAGTACAAACTAATAGAAGAACTCAATGCGGTAT 662
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 641 AAGAAGACTACAAACGATATTCACAACAGTACAAACTAATAGAAGAACTCAATGCAGTGT 700
Query 663 ACGAGAATGAACCGAACAATTCTTCTAAGATAATGGAGATCATGCAGAAGATGCAAGAAT 722
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 701 ACGAGAATGAACCTAACAATTCATCTAAGATAATGGAGATCATGCAAAAGATGCAGGAAT 760
Query 723 GCGGACAACCCCCGAGTGATATAGTTAAAGAGATCGATCCCGGGTTTGATTTTGCAAGTC 782
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 761 GTGGACAACCCCCGAGTGATATAGTTAAAGAGATTGATCCCGGGTTTGATTTCGCAAGTC 820
Query 783 TAGGCCAAATATCTCCGGAGATGCTAGAGTCCTCGCCAAATTGCTGTATAATGTGATGGG 842
| ||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 821 TTGGCCAAATATCCCCAGAGATGCTGGAGTCCTCGCCAAATTGCTGTATCATGTGATGGG 880
Query 843 GCCAAACAGCTTCAAAAATTA-AT-TA-T--GT----C----GT-TT-TAAAACTCAAAA 887
||||||||||||||| ||||| || | | || | || || ||||||||||||
Sbjct 881 GCCAAACAGCTTCAAGAATTATATGTCGTTTGTTTTTCTCTTGTGTTATAAAACTCAAAA 940
Query 888 GCTCTGTTTCAATTATGATTGGAATTTCACACa-a-aaaaa 926
||||||||||||||||||||||||||||||||| | |||||
Sbjct 941 GCTCTGTTTCAATTATGATTGGAATTTCACACACACAAAAA 981
> AT5G17550.1 | Symbols: PEX19-2, AtPEX19-2 | peroxin 19-2 | chr5:5786510-5788239
REVERSE LENGTH=1044
Length=1044
Score = 660 bits (357), Expect = 0.0
Identities = 643/779 (83%), Gaps = 27/779 (3%)
Strand=Plus/Plus
Query 74 GAGGAAGAGAAACGCCTAAGGAAAATGGCCAAC---AGTCACACCGATGACTTAGACGAG 130
|||||||||| || | | ||| ||||||||| | ||||||||||||||||||||||
Sbjct 53 GAGGAAGAGAGAC-TC-GA-GAATATGGCCAACGATACTCACACCGATGACTTAGACGAG 109
Query 131 CTTCTCGATAGTGCATTGGATGATTTCAAAGATCTCAATCTTTCTCaaagaaatcaaagg 190
|||||||||||||| |||||||||||||| ||||| |||||| ||||||||||| |||
Sbjct 110 CTTCTCGATAGTGCCTTGGATGATTTCAAGGATCTTAATCTTACTCAAAGAAAT-GGAGG 168
Query 191 gaagcgcaagaggaggagaagaagaagaaagaagagaCGGTTTTATTACCGAGTGGAGTT 250
| | |||| || ||| | | | ||| ||||||| | | ||| || ||||| |||
Sbjct 169 G--G-TTAAGA-AAGAAGAGGGTG-ATAAAAAAGAGACAGAGTCATTGCCAAGTGGGGTT 223
Query 251 CAAGGTCTTGGAATGGGATTACCAGATATGAGAAGCAAGAAAAAAGGAAAGCAAAAGGTT 310
||||||||||||||||| |||||||||||||| || ||||| ||||||||| ||||| ||
Sbjct 224 CAAGGTCTTGGAATGGGGTTACCAGATATGAGGAGTAAGAAGAAAGGAAAGAAAAAGATT 283
Query 311 TCTAAAGAGGATCATGTTGCTGAAGCTCTTGATAAGCTTAGGGAACAAACTAGGGAAACT 370
|||||||||| |||||| |||| || |||||||| || |||||||||||||| ||||||
Sbjct 284 GCTAAAGAGGACCATGTTACTGAGGCACTTGATAAACTCAGGGAACAAACTAGAGAAACT 343
Query 371 GTCAAAGGA-TTGGAATCCATT-TCTTCTAAGCAGCTGCC-A--GCTTCTGATGATGATG 425
|| || ||| ||| | ||| || || || ||||||| || | | ||||||||||| |
Sbjct 344 GTGAAGGGACTTG-AGTCC-TTGTCATCGAAGCAGCAACCTACAGGTTCTGATGATGCT- 400
Query 426 GAATGGTTGAGGATTTTCTCAAGCAATTTGAGGATCTTACTGGATCCAAGGACTTGGAAT 485
| ||||||| |||| |||||||||| ||| |||||||||| || || |||||||| |
Sbjct 401 -A-TGGTTGAAGATTGGATCAAGCAATTCGAGAATCTTACTGGGTCTAACGACTTGGAGT 458
Query 486 CAATAGTCGAAACGATGATGCAACAGCTATTGTCGAAGGATATTCTTCACGAACCAATGA 545
| ||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 459 CGATAGTGGACACGATGATGCAACAGCTGTTATCGAAGGATATTCTTCACGAACCAATGA 518
Query 546 AGGAGCTTGGTGCAAGATATCCGAAATGGCTAAAAGAGAATGAAGCCAGTCTAACCAAAG 605
| ||| ||||||||||||| || ||||||||| ||||| ||||| ||||||||| ||| |
Sbjct 519 AAGAGATTGGTGCAAGATACCCAAAATGGCTAGAAGAGCATGAATCCAGTCTAAACAAGG 578
Query 606 AAGACTACAAACGTTATTCACAACAGTACAAACTAAT-AGAAGAACTCAA-TGCGGTATA 663
|||| | | | |||||||||| ||||| |||| || | |||||||||| | ||| ||
Sbjct 579 AAGAATTCGATCGTTATTCACGCCAGTATGAACTTATCA-AAGAACTCAACTT-GGTGTA 636
Query 664 CGAGAATGAACCGAACAATTCTTCTAAGATAATGGAGATCATGCAGAAGATGCAAGAATG 723
|||||| ||||| |||||||| | |||||||||||||| ||||||||||||||||| ||
Sbjct 637 CGAGAACGAACCAAACAATTCGACCAAGATAATGGAGATAATGCAGAAGATGCAAGAGTG 696
Query 724 CGGACAACCCCCGAGTGATATAGTTAAAGAGATCGATCCCGGGTTTGATTTTGCAAGTCT 783
|||||||| |||||||||||||| ||||||| ||||| || |||||||| || |||||
Sbjct 697 TGGACAACCACCGAGTGATATAGTGCAAGAGATGGATCCTGGCTTTGATTTCGCTAGTCT 756
Query 784 AGGCCAAATATCTCCGGAGATGCTAGAGTCCTCGCCAAATTGCTGTATAATGTGATGGG 842
|||||||| |||||||| ||||| ||||| || |||||||| ||| |||||||| |||
Sbjct 757 GGGCCAAATGTCTCCGGACATGCTCGAGTCTTCACCAAATTGTTGTGTAATGTGA-GGG 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45260966447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5