BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477600
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03550.1 | Symbols: | RING/U-box superfamily protein | chr3... 1631 0.0
AT5G17600.1 | Symbols: | RING/U-box superfamily protein | chr5... 217 3e-55
> AT3G03550.1 | Symbols: | RING/U-box superfamily protein | chr3:850108-851590
REVERSE LENGTH=1483
Length=1483
Score = 1631 bits (883), Expect = 0.0
Identities = 1178/1309 (90%), Gaps = 66/1309 (5%)
Strand=Plus/Plus
Query 68 ATGGGTTCAACAGGAAACCCTAATCCATGGGGT---ACATACGATTCATACAGAGACTGT 124
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 130 ATGGGTTCAACAGGAAACCCTAATCCATGGGGTACAACATACGATTCATACAGAGACTGT 189
Query 125 TCTCAAGGAGTATGCAGTGTCTACTGCCCTCAATGGTGTTACGTCATCTTCcctcctcct 184
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 190 TCTCAAGGAGTATGCAGTGTCTATTGCCCTCAATGGTGTTACGTCATCTTCCCTCCTCCT 249
Query 185 ccttccttctacctcgacgacgaagacgattcttcctcctctgatttctctcctctcctc 244
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 250 CCTTCCTTCTATCTCGACGACGAAGACGACTCTTCCTCCTCTGATTTCTCTCCTCTCCTC 309
Query 245 ATCGCTCTTATCGGAATCCTCGCTAGTGCCTTCATCCTCGTCAGCTACTACACTCTCATC 304
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 310 ATCGCTCTCATCGGAATCCTCGCTAGCGCCTTCATCCTCGTCAGCTACTACACTCTCATC 369
Query 305 TCCAAATACTGCCACCGCCGTCGTCACAACTCCTCCTCCTCCACCTCCGCCGCAGTTATA 364
||||||||||||||||||||||| ||||||||||||| || ||||||||||||| ||||
Sbjct 370 TCCAAATACTGCCACCGCCGTCGCCACAACTCCTCCT-CT--ACCTCCGCCGCAGCTATA 426
Query 365 AACCG-AGATCA-CGGAAT-CTCAT--C-A-G-----ATTAC-AC-ATGGCAA-GAAGCT 409
||| | | ||| | || | | | | | | | | || || | ||| | ||||
Sbjct 427 AACAGAATCTCATCAGATTACACCTGGCAAGGAACCAACAACAACAACAACAACGGAGCT 486
Query 410 ACGAATCCGAATCCGACGA-T--TGGTGGTGGT---GATGGACTCGATGAATCTCTGATT 463
||||||||||||| |||| | |||||||||| ||||||||||||||||||||||||
Sbjct 487 ACGAATCCGAATCAAACGATTGGTGGTGGTGGTGGCGATGGACTCGATGAATCTCTGATT 546
Query 464 AAATCGATTACTGTTTACAAATACAGAAAGATGGATGGATTTGTTGAATCATCAGATTGT 523
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 547 AAATCGATAACTGTTTACAAATACAGAAAGATGGATGGATTTGTTGAATCTTCAGATTGC 606
Query 524 TCTGTTTGTTTAAGCGAGTTTCAAGAAAACGAGAGCTTGAGATTGTTACCTAAATGTAAC 583
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 607 TCTGTTTGTTTAAGCGAGTTTCAAGAGAACGAGAGCTTGAGATTGTTACCTAAATGCAAC 666
Query 584 CACGCGTTTCACGTTCCTTGTATTGATACTTGGTTGAAATCTCACTCTAATTGTCCTCTC 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CACGCGTTTCACGTTCCTTGTATTGATACTTGGTTGAAATCTCACTCTAATTGTCCTCTC 726
Query 644 TGCCGTGCTTTCATCGCCGGAGTTCACGTCGCTTCCTCCGCCGTTGAGATCGTCGATGTA 703
||||| || ||||| | | ||| |||||||||||||||||||||||||| ||
Sbjct 727 TGCCGCGCCTTCAT---C---G-TCA-----CTTCCTCCGCCGTTGAGATCGTCGATTTA 774
Query 704 ACCAATCAACCGATCGCTACAGAGAACAACTCGATTTCGATCGGAGATGATTCCGTCG-T 762
|||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 775 ACCAATCAACAGATCGTTACGGAGAACAACTCGATTTCGACCGGAGATGATTCCGTCGTT 834
Query 763 -T-ATTAACTTAGATCTGGAAAATTCTAGATCTCGGAATGAGGCGGTTAACGGCGGATCG 820
| |||||||||||||||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 835 GTCGTTAACTTAGATCTGGAAAATTCTAGATCTCGGAATGAGACGGTTAATGAAGGATCG 894
Query 821 ACGCCGAAACCGCCGGAGATGCAGGAGTT-AAGAGACGGAGAAGAGGAGGTGACTCGGAG 879
||||||||||| |||||||||||||| || ||||||||||| | | || | |||||
Sbjct 895 ACGCCGAAACCACCGGAGATGCAGGA-TTCAAGAGACGGAG-A-A-GA---G---CGGAG 944
Query 880 ATCAGCGTCGTTAAACTCAAGCGCCGCTGTGGTATCGATCGCTGATATACTAAGGGAGAT 939
||| ||||||||||||||| ||| || ||||||||||||||| |||||||||||||||||
Sbjct 945 ATCGGCGTCGTTAAACTCAGGCGGCGGTGTGGTATCGATCGCAGATATACTAAGGGAGAT 1004
Query 940 TGAAGACGAAGAAGAATCAGCGGGTGTAGGAACTTCTCGGTGGGTAGAAGAAGGGGAAGG 999
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TGAAGACGACGAAGAATCAGCGGGTGTAGGAACTTCTCGGTGGGTAGAAGAAGGGGAAGG 1064
Query 1000 AGAGAAGACGCCTCCGCCGTCAGGATCGTCGGCCAATCAAACAAACGGAATTTCGAATTT 1059
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1065 AGAGAAGACGCCTCCGCCGTCAGGATCGGCGGCGAATCAAACAAACGGAATTTCGAATTT 1124
Query 1060 TCTGGTTCGGAGTTCAATGGCGGCGATGAAGAGATCTGGTTATGATAGGGCAAAAAATTA 1119
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1125 TCTGGTTCGGAGTTCAATGGCGGCGATGAAGAGATCTGGTTACGATAGAGCAAAAAATTA 1184
Query 1120 CCGTTTACCGAAGTAAGTTaaaaaaaaaaGAA-AAGGAATAATATTTAGGGAATTTGAAT 1178
|||||||||||| ||||||| |||||||| || || || || || ||||||||||||
Sbjct 1185 CCGTTTACCGAAATAAGTTATAAAAAAAA-AATAA--AA-AA-AT--AGGGAATTTGAAA 1237
Query 1179 TTATTTTTCAAAGTGTCAAAAAAGTGCTGATTGGCTTTTT-AAAAAGTT-TATGTATTTA 1236
|||||||| ||| | ||||||||||||||||||||||||| ||||| | ||| | ||||
Sbjct 1238 TTATTTTTAAAAATATCAAAAAAGTGCTGATTGGCTTTTTTAAAAAAATCTATAT-TTTA 1296
Query 1237 GTTTTGGTAATCTTTATTATACCAATCAGAATCATTGTCAAACCATTTGAGAAACAGAGT 1296
|||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1297 GTTTTGGTAATCTT-ATTATAACAATCAGAATCATTGT-AAACCATTTGAGAAACAGAGC 1354
Query 1297 AATCGAAGAGTTTTGAATTTACCGCCCATATATTCTTAGGTGttttttt 1345
|||| ||||||||||||||||||||||| ||||||||| || |||||||
Sbjct 1355 AATCAAAGAGTTTTGAATTTACCGCCCAAATATTCTTACGTATTTTTTT 1403
> AT5G17600.1 | Symbols: | RING/U-box superfamily protein | chr5:5799905-5801244
REVERSE LENGTH=1340
Length=1340
Score = 217 bits (117), Expect = 3e-55
Identities = 208/250 (83%), Gaps = 13/250 (5%)
Strand=Plus/Plus
Query 82 AAACCCTAATCCATGGGGT-A-CATACGATTCATACAGA-GACTGTTCTCAAGGAGTATG 138
||||||||| |||| ||| | ||||||||||||||| | || |||||||||||| | ||
Sbjct 136 AAACCCTAACCCAT--GGTCACCATACGATTCATACA-ATGATTGTTCTCAAGGAATCTG 192
Query 139 CAGTGTCTACTGCCCTCAATGGTGTTACGTCATCTTCcctcctcctccttccttc-tacc 197
|| ||||||| ||||||||||||||| | ||||||||||||||||| |||||| | |
Sbjct 193 CAACATCTACTGTCCTCAATGGTGTTACCTAATCTTCCCTCCTCCTCC-TCCTTCTTTCT 251
Query 198 tcgacgacgaagacgattcttcctcct-ct-ga-tttctctcctctcctcATCGCTCTTA 254
|| |||||| ||| ||| ||||||| || | |||||||||||||||||||||||| |
Sbjct 252 TCCTCGACGACGACTCTTCCTCCTCCTCCTCCAGTTTCTCTCCTCTCCTCATCGCTCTCA 311
Query 255 TCGGAATCCTCGCTAGTGCCT-TCATCCTCGTCAGCTACTACACTCTCATCTCCAAATAC 313
|||| ||| | | || | || ||||||||||||||||||||||||||||||| ||||||
Sbjct 312 TCGGTATCTTAACCAGCG-CTCTCATCCTCGTCAGCTACTACACTCTCATCTCAAAATAC 370
Query 314 TGCCACCGCC 323
|| || ||||
Sbjct 371 TGTCATCGCC 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5