BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477601 Length=1748 Score E Sequences producing significant alignments: (Bits) Value AT3G03560.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 2671 0.0 > AT3G03560.1 | Symbols: | unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr3:852910-856486 REVERSE LENGTH=1809 Length=1809 Score = 2671 bits (1446), Expect = 0.0 Identities = 1682/1789 (94%), Gaps = 43/1789 (2%) Strand=Plus/Plus Query 1 ATGGATGACAATCGGAGTTCTGAATCAATCAAAAGGCATGAGATTGAGAACGATACTATT 60 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGGATGATAATCGGAGTTCTGAATCAATCAAAAGGCATGAGATTGAGAAAGATACTATT 60 Query 61 GCTTCGAGGAAGCTAGAAGATAGTAATGCTAAGTTAATTCAAGATCCTGAGGAAATGGCA 120 || ||||||||||||||||||| |||| |||||||||| ||||||||||| ||||||||| Sbjct 61 GCGTCGAGGAAGCTAGAAGATACTAATACTAAGTTAATACAAGATCCTGAAGAAATGGCA 120 Query 121 CTTTATGCAAAAGTGAGATCACAAGAAGAGGAGATTCATAGTCTCCAGGAACGAATTGCT 180 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTTTATGCGAAAGTGAGATCACAAGAAGAGGAGATTCATAGTCTCCAGGAACGAATTGCT 180 Query 181 GCTGCTTGTTTGAAGGATATGCAGCTGCTCAATGAGAAGTATGGATTAGAGAGAAAATGT 240 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 181 GCTGCTTGTTTGAAGGATATGCAGCTGCTGAATGAGAAGTATGGACTAGAGAGAAAATGT 240 Query 241 GCTGATCTTCGAGTGGCAATTGATGAGAAACAAAATGAATCTGTTACATCTGCGTTGAAT 300 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 GCTGATCTTCGAGTGGCAATTGATGAGAAACAAAATGAATCTGTTACGTCTGCGTTGAAT 300 Query 301 GAGTTGGCTCGTAGAAAAGGTGATCTTGAAGAAAATTCGAAGTTGGCACATGATTTAAAG 360 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 301 GAGTTGGCTCGTAGAAAAGGTGATCTTGAAGAAAATTTGAAGTTGGCACATGATTTAAAG 360 Query 361 GTTACAGAAGACGAGAGGTATATATTCATGACGTCCTTACTTGGTTTATTAGCTGAGTAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GTTACAGAAGACGAGAGGTATATATTCATGACGTCCTTACTTGGTTTATTAGCTGAGTAT 420 Query 421 GGTGTTTGGCCTCGTGTTGCAAATGCCACCGCTATATCCAGCGGCATAAAGCACTTGCAT 480 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 421 GGTGTTTGGCCTCGTGTTGCTAATGCTACCGCTATATCCAGCGGCATAAAGCACTTGCAT 480 Query 481 GATCAGTTGCAATGGAAGACTAAAGCTTGCAATGATAGGATTAGAGAACTATCATCTATT 540 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 481 GATCAGTTGCAATGGAAGACTAAAGCTTGCAATGATAGGATTAGAGAGTTATCATCTATT 540 Query 541 GTGGAAAACCAACCGAGAACAGATTTTATTAGTAAAGACAACCATGATCCCAGAAATTCG 600 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GTGGAAAACCAACCGGGAACAGATTTTATTAGTAAAGACAACCATGATCCCAGAAATTCA 600 Query 601 AAAAGTCAAGCTTCTTATGGATCCACGGATCGTGGTAATGATTATCAGACCAGTGAACAA 660 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 601 AAAACTCAAGCTTCTTATGGATCCACGGATCGTGGTAATGATTATCAGACCAATGAACAA 660 Query 661 CTTTTGCCACCAATGGAAAATGTTACGAGAAACCCGTATCATAACGCTATGCAAGACACT 720 || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 661 CTCTTGCCACCAATGGAAAATGTTACGAGAAACCCGTATCATAACATTATGCAAGACACT 720 Query 721 GAAGGTTTAAGATTTAATAATCAGGTAGGCGGTGGATCTCAAGGAATTTTCCAGCAGCCG 780 ||| |||| ||||||||||||||| | || |||||||||||||||||||||| ||||||| Sbjct 721 GAAAGTTTGAGATTTAATAATCAGATTGGTGGTGGATCTCAAGGAATTTTCCCGCAGCCG 780 Query 781 AAAAGGGAAAATTTTGGATATCCTCTAAGTAGTGTGGCGGGGAAGGAAATGATTCGAGAA 840 |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 781 AAAAGGGAAAATTTTGGATATCCTCTTAGTAGTGTGGCGGGGAAGGAAATGATTCAAGAA 840 Query 841 AGAGACGAAAAAGTTGAGAATTCTTCCATGTTTGATGCTTATAACGGGAATGAAGAGTTT 900 ||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 841 AGAGAAGAAAAAGCTGAGAATTCTTCCATGTTTGATGCTTATAATGGGAATGAAGAGTTT 900 Query 901 GCTTCTCATGTTTATGAAGAGGGACCAGGAATTGATGGATTTCAGATTATTGGTGATGCA 960 |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct 901 GCTTCTCATGTTTATGAAGAGGGACCTGGAATCGATGGATTTCAGATTATTGGAGATGCT 960 Query 961 ATACCTGGAGAAAAAGTTCTTGGTTGTGGTTTTCCAGTGCGAGGAACCACTCTCTGTATG 1020 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 961 ATACCTGGAGAAAAAGTTCTTGGTTGTGGGTTTCCAGTGCGAGGAACCACTCTCTGTATG 1020 Query 1021 TTTCAGTGGGTTCGGCATCTTGAAGATGGCACAAGACAATACATCGAGGGAGCCACCCAC 1080 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1021 TTTCAGTGGGTTCGGCATCTTGAAGATGGCACAAGACAATACATCGAGGGAGCCACCCAT 1080 Query 1081 CCAGAGTATGTTGTAACTGCGGATGATGTAGATAAACTGATTGCTGTTGAGTGTATTCCA 1140 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 CCAGAGTATATTGTAACTGCGGATGATGTAGATAAACTGATTGCTGTTGAGTGTATTCCA 1140 Query 1141 ATGGATGATCAAGGTCGTCAGGGAGAATTAGTGAGATTGTTTGCTAATGATCAGAACAAG 1200 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1141 ATGGATGATCAAGGTCGTCAGGGAGAATTAGTGAGATTGTTTGCTAATGATCAAAACAAG 1200 Query 1201 ATTAGATGTGATACAGAGATGCAAACAGAAATCGACACTTATTTATCCAGAGGTCAAGCA 1260 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1201 ATTAGATGTGATACAGAGATGCAAACAGAAATCGACACTTATATATCCAGAGGTCAAGCA 1260 Query 1261 AGCTTTAATGTGCAGCTTCTGATGGATTCATCAGAGAGTTGGGAACCCGCAACGGTTATT 1320 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1261 AGCTTTAATGTGCAGCTTCTGATGGATTCATCAGAGAGTTGGGAACCCGCAACTGTTGTT 1320 Query 1321 TTGAAGAGATCTAGTTACCAGATTAAAACGAACACCACAGAAG-TG-A-T-ATC--AGAG 1374 |||||||||||||||||||||||||||||||| |||||||||| || | | ||| |||| Sbjct 1321 TTGAAGAGATCTAGTTACCAGATTAAAACGAATACCACAGAAGCTGTAGTGATCTCAGAG 1380 Query 1375 AAATACTCAAAGGAACTCCAGATAAAAGTACCGTGTGGATTCTCAACACAGTTTGTTCTG 1434 ||||||||||||||||| ||||||| |||||||| |||| || ||||||||||| ||| Sbjct 1381 AAATACTCAAAGGAACTTCAGATAAGAGTACCGTCTGGAGAATCCACACAGTTTGTACTG 1440 Query 1435 ATAAGTTATGATGGATCTTCACATCCTATAAGCACACTCAATGTCCGTATGCGTGATACG 1494 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1441 ATAAGTTATGATGGATCTTCACATCCCATAAGCACACTCAATGTCCGTATGCGTGATACG 1500 Query 1495 CTAGTCTTGACGATGAGAATGCTTCAAAGCAAGGCACTGGACGAACGCAGAAAAGGACGA 1554 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1501 CTAGTCTTGACGATGAGAATGCTTCAAAGCAAGGCACTGGACGAGCGCAGAAAAGGACGA 1560 Query 1555 GTTTAAAA---AC--A-GA-T-C-CA-T-C----C---TC-------GAGTCCTTCAAAA 1589 |||||||| | | || | | || | | | || ||| |||||||| Sbjct 1561 GTTTAAAAGTTAGTGATGACTACACACTACAGAACAGATCCATCCTCGAGACCTTCAAAT 1620 Query 1590 TTAAGTTTAATAAaat----------atttctatttttataattgagtaataattgttat 1639 |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1621 TTAAGTTTAATAAAATGGGGTCTGCGATTTCTATTTTTATAATTGAGTAATAATTGTTAT 1680 Query 1640 cgctataatttttgtattattattatttttgtcgtttAGGATCTTTGTTTTTCTGAACAA 1699 ||||||| |||||||||||||||| |||| |||||||||| ||| ||||||||||||||| Sbjct 1681 CGCTATAGTTTTTGTATTATTATT-TTTT-GTCGTTTAGGTTCTATGTTTTTCTGAACAA 1738 Query 1700 CAAAAAGAAATCTTATTGTAATAGACTGTAAAATTCACTCTGTACTGAA 1748 |||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 1739 CAAAAATAAATCTTATTGTAATAGACTGTAACATTCACTCTGTACTGAA 1787 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 86445338490 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5