BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477601
Length=1748
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03560.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 2671 0.0
> AT3G03560.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits
to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa
- 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes
- 12 (source: NCBI BLink). | chr3:852910-856486 REVERSE
LENGTH=1809
Length=1809
Score = 2671 bits (1446), Expect = 0.0
Identities = 1682/1789 (94%), Gaps = 43/1789 (2%)
Strand=Plus/Plus
Query 1 ATGGATGACAATCGGAGTTCTGAATCAATCAAAAGGCATGAGATTGAGAACGATACTATT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGATGATAATCGGAGTTCTGAATCAATCAAAAGGCATGAGATTGAGAAAGATACTATT 60
Query 61 GCTTCGAGGAAGCTAGAAGATAGTAATGCTAAGTTAATTCAAGATCCTGAGGAAATGGCA 120
|| ||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||||
Sbjct 61 GCGTCGAGGAAGCTAGAAGATACTAATACTAAGTTAATACAAGATCCTGAAGAAATGGCA 120
Query 121 CTTTATGCAAAAGTGAGATCACAAGAAGAGGAGATTCATAGTCTCCAGGAACGAATTGCT 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTTATGCGAAAGTGAGATCACAAGAAGAGGAGATTCATAGTCTCCAGGAACGAATTGCT 180
Query 181 GCTGCTTGTTTGAAGGATATGCAGCTGCTCAATGAGAAGTATGGATTAGAGAGAAAATGT 240
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 181 GCTGCTTGTTTGAAGGATATGCAGCTGCTGAATGAGAAGTATGGACTAGAGAGAAAATGT 240
Query 241 GCTGATCTTCGAGTGGCAATTGATGAGAAACAAAATGAATCTGTTACATCTGCGTTGAAT 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GCTGATCTTCGAGTGGCAATTGATGAGAAACAAAATGAATCTGTTACGTCTGCGTTGAAT 300
Query 301 GAGTTGGCTCGTAGAAAAGGTGATCTTGAAGAAAATTCGAAGTTGGCACATGATTTAAAG 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 GAGTTGGCTCGTAGAAAAGGTGATCTTGAAGAAAATTTGAAGTTGGCACATGATTTAAAG 360
Query 361 GTTACAGAAGACGAGAGGTATATATTCATGACGTCCTTACTTGGTTTATTAGCTGAGTAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTACAGAAGACGAGAGGTATATATTCATGACGTCCTTACTTGGTTTATTAGCTGAGTAT 420
Query 421 GGTGTTTGGCCTCGTGTTGCAAATGCCACCGCTATATCCAGCGGCATAAAGCACTTGCAT 480
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 421 GGTGTTTGGCCTCGTGTTGCTAATGCTACCGCTATATCCAGCGGCATAAAGCACTTGCAT 480
Query 481 GATCAGTTGCAATGGAAGACTAAAGCTTGCAATGATAGGATTAGAGAACTATCATCTATT 540
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 GATCAGTTGCAATGGAAGACTAAAGCTTGCAATGATAGGATTAGAGAGTTATCATCTATT 540
Query 541 GTGGAAAACCAACCGAGAACAGATTTTATTAGTAAAGACAACCATGATCCCAGAAATTCG 600
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTGGAAAACCAACCGGGAACAGATTTTATTAGTAAAGACAACCATGATCCCAGAAATTCA 600
Query 601 AAAAGTCAAGCTTCTTATGGATCCACGGATCGTGGTAATGATTATCAGACCAGTGAACAA 660
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 AAAACTCAAGCTTCTTATGGATCCACGGATCGTGGTAATGATTATCAGACCAATGAACAA 660
Query 661 CTTTTGCCACCAATGGAAAATGTTACGAGAAACCCGTATCATAACGCTATGCAAGACACT 720
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 CTCTTGCCACCAATGGAAAATGTTACGAGAAACCCGTATCATAACATTATGCAAGACACT 720
Query 721 GAAGGTTTAAGATTTAATAATCAGGTAGGCGGTGGATCTCAAGGAATTTTCCAGCAGCCG 780
||| |||| ||||||||||||||| | || |||||||||||||||||||||| |||||||
Sbjct 721 GAAAGTTTGAGATTTAATAATCAGATTGGTGGTGGATCTCAAGGAATTTTCCCGCAGCCG 780
Query 781 AAAAGGGAAAATTTTGGATATCCTCTAAGTAGTGTGGCGGGGAAGGAAATGATTCGAGAA 840
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 781 AAAAGGGAAAATTTTGGATATCCTCTTAGTAGTGTGGCGGGGAAGGAAATGATTCAAGAA 840
Query 841 AGAGACGAAAAAGTTGAGAATTCTTCCATGTTTGATGCTTATAACGGGAATGAAGAGTTT 900
||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 AGAGAAGAAAAAGCTGAGAATTCTTCCATGTTTGATGCTTATAATGGGAATGAAGAGTTT 900
Query 901 GCTTCTCATGTTTATGAAGAGGGACCAGGAATTGATGGATTTCAGATTATTGGTGATGCA 960
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 901 GCTTCTCATGTTTATGAAGAGGGACCTGGAATCGATGGATTTCAGATTATTGGAGATGCT 960
Query 961 ATACCTGGAGAAAAAGTTCTTGGTTGTGGTTTTCCAGTGCGAGGAACCACTCTCTGTATG 1020
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 ATACCTGGAGAAAAAGTTCTTGGTTGTGGGTTTCCAGTGCGAGGAACCACTCTCTGTATG 1020
Query 1021 TTTCAGTGGGTTCGGCATCTTGAAGATGGCACAAGACAATACATCGAGGGAGCCACCCAC 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTTCAGTGGGTTCGGCATCTTGAAGATGGCACAAGACAATACATCGAGGGAGCCACCCAT 1080
Query 1081 CCAGAGTATGTTGTAACTGCGGATGATGTAGATAAACTGATTGCTGTTGAGTGTATTCCA 1140
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CCAGAGTATATTGTAACTGCGGATGATGTAGATAAACTGATTGCTGTTGAGTGTATTCCA 1140
Query 1141 ATGGATGATCAAGGTCGTCAGGGAGAATTAGTGAGATTGTTTGCTAATGATCAGAACAAG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1141 ATGGATGATCAAGGTCGTCAGGGAGAATTAGTGAGATTGTTTGCTAATGATCAAAACAAG 1200
Query 1201 ATTAGATGTGATACAGAGATGCAAACAGAAATCGACACTTATTTATCCAGAGGTCAAGCA 1260
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 ATTAGATGTGATACAGAGATGCAAACAGAAATCGACACTTATATATCCAGAGGTCAAGCA 1260
Query 1261 AGCTTTAATGTGCAGCTTCTGATGGATTCATCAGAGAGTTGGGAACCCGCAACGGTTATT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1261 AGCTTTAATGTGCAGCTTCTGATGGATTCATCAGAGAGTTGGGAACCCGCAACTGTTGTT 1320
Query 1321 TTGAAGAGATCTAGTTACCAGATTAAAACGAACACCACAGAAG-TG-A-T-ATC--AGAG 1374
|||||||||||||||||||||||||||||||| |||||||||| || | | ||| ||||
Sbjct 1321 TTGAAGAGATCTAGTTACCAGATTAAAACGAATACCACAGAAGCTGTAGTGATCTCAGAG 1380
Query 1375 AAATACTCAAAGGAACTCCAGATAAAAGTACCGTGTGGATTCTCAACACAGTTTGTTCTG 1434
||||||||||||||||| ||||||| |||||||| |||| || ||||||||||| |||
Sbjct 1381 AAATACTCAAAGGAACTTCAGATAAGAGTACCGTCTGGAGAATCCACACAGTTTGTACTG 1440
Query 1435 ATAAGTTATGATGGATCTTCACATCCTATAAGCACACTCAATGTCCGTATGCGTGATACG 1494
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1441 ATAAGTTATGATGGATCTTCACATCCCATAAGCACACTCAATGTCCGTATGCGTGATACG 1500
Query 1495 CTAGTCTTGACGATGAGAATGCTTCAAAGCAAGGCACTGGACGAACGCAGAAAAGGACGA 1554
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1501 CTAGTCTTGACGATGAGAATGCTTCAAAGCAAGGCACTGGACGAGCGCAGAAAAGGACGA 1560
Query 1555 GTTTAAAA---AC--A-GA-T-C-CA-T-C----C---TC-------GAGTCCTTCAAAA 1589
|||||||| | | || | | || | | | || ||| ||||||||
Sbjct 1561 GTTTAAAAGTTAGTGATGACTACACACTACAGAACAGATCCATCCTCGAGACCTTCAAAT 1620
Query 1590 TTAAGTTTAATAAaat----------atttctatttttataattgagtaataattgttat 1639
|||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1621 TTAAGTTTAATAAAATGGGGTCTGCGATTTCTATTTTTATAATTGAGTAATAATTGTTAT 1680
Query 1640 cgctataatttttgtattattattatttttgtcgtttAGGATCTTTGTTTTTCTGAACAA 1699
||||||| |||||||||||||||| |||| |||||||||| ||| |||||||||||||||
Sbjct 1681 CGCTATAGTTTTTGTATTATTATT-TTTT-GTCGTTTAGGTTCTATGTTTTTCTGAACAA 1738
Query 1700 CAAAAAGAAATCTTATTGTAATAGACTGTAAAATTCACTCTGTACTGAA 1748
|||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1739 CAAAAATAAATCTTATTGTAATAGACTGTAACATTCACTCTGTACTGAA 1787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86445338490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5