BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477602
Length=2273
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03570.1 | Symbols: | Protein of unknown function (DUF3550/... 3373 0.0
> AT3G03570.1 | Symbols: | Protein of unknown function (DUF3550/UPF0682)
| chr3:856876-860469 FORWARD LENGTH=2325
Length=2325
Score = 3373 bits (1826), Expect = 0.0
Identities = 2069/2183 (95%), Gaps = 30/2183 (1%)
Strand=Plus/Plus
Query 1 GTTGGTAAACCGCT-CGGTAC-A-A----TAGTCATCCAAAA-GTCGGATTCGCCGATCT 52
|||||||||||| | |||||| | | ||||||||||||| ||| |||||||||||||
Sbjct 1 GTTGGTAAACCG-TCCGGTACAAGATTTTTAGTCATCCAAAAGGTC-GATTCGCCGATCT 58
Query 53 ---AGACGACGACGACG---ACCAAACACTCCGATCAACGGTCCTCCGATTCCCTCTCGC 106
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 59 AGAAGACGACGACGACGACTACCAAACACTCCGATCAACGGTCCTCCGATTCTCTCTCGC 118
Query 107 TTTCGTCTTGACCTGAGAAATGTCGCAGCAAATCAGCGG---TAATAATATCCCGCTGAG 163
|||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 119 TTTCGTGGCGACCTCAAAAATGTCGCAGCAAATCAGCGGTAATAATAATATCCCGCTGAG 178
Query 164 TGAAGTTTACTGGTCTCTTGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGACTT 223
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGAAGTTTACTGGTCTCTCGTTAACAAAGCCGATAAGAAATTCTCCAAGATCAGAGACTT 238
Query 224 GCCCTTCTATGAACGCACCAGGTATGAAAACTATTTCTTCAAGGTATTCAAAGTATACAC 283
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 239 GCCCTTCTATGAACGCTCCAGGTATGAGAACTATTTCTTCAAGGTATTCAAAGTATACAC 298
Query 284 ACAGTTATGGAAGTTTCAGCAAGAAAATCGGCAGAAGCTTGTTGAAGCTGGACTTAAGAG 343
||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 299 ACAACTATGGAAGTTTCAGCAAGAGAATAGGCAGAAGCTTGTTGAAGCTGGACTTAAGAG 358
Query 344 ATGGGAGATTGGAGAGATCGCATCTCGAATTGCACAGCTTTACTATGGACATTATATGCG 403
||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 359 ATGGGAGATTGGAGAGATCGCTTCTCGCATTGCCCAGCTTTACTATGGACATTATATGCG 418
Query 404 GACAAGTGATGCCGGTTACTTATCTGAGTCCTATGTATTCTACGAAGCAATACTCACTAG 463
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 AACAAGTGATGCTGGTTACTTATCCGAGTCCTATGTATTCTACGAAGCAATACTCACTAG 478
Query 464 GGAGTACTTCAAAGAAGGATTGTTTCAGGATCTCAATATTGCAAACAAACAGCTACGGTT 523
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 479 GGAGTACTTCAAAGATGGATTGTTTCAGGATCTCAATATTGCAAACAAGCAGCTTCGGTT 538
Query 524 TCTTGCAAGGTTTCTTATGGTGTGTTTGGTCCTTGGCCGCCGTGAGATGGTGCATCAACT 583
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 539 TCTTGCAAGGTTTCTTATGGTGTGTTTGGTTCTTGGCCGCCGTGAGATGGTGCATCAACT 598
Query 584 TGTTGATCAGTTTAAACGGTTGATAGATGAATGCAAGAGGACATTCCAGGAAACCGATTT 643
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 599 CGTTGATCAGTTTAAACGGTTGATTGATGAATGCAAGAGGACATTCCAGGAAACCGATTT 658
Query 644 TAAAGAATGGAAGGTGGTGGCGCAGGAAATAGTTAGATTTCTGAAATCTGACACTGCATT 703
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 659 TAAGGAATGGAAGGTGGTGGCGCAGGAAATAGTTAGATTTCTGAAATCGGACACTGCATT 718
Query 704 TATGAATATCAGACCTCTAAGATACAGTCTTGTACTGGATCCTAATTTGGATGCTGGTAC 763
||||| || |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 719 CATGAACATTAGACCTCTAAGATACAGTCTTGTATTGGATCCTAATCTGGATGCTGGTAC 778
Query 764 ACCGCGTGCAAGTAGATCTTTAAGGTTGACGGATGCAATCTTGAGCAGCTACTATTATAA 823
|||||||||||||| |||||||||||||||||||| ||||||||||| || || | |||
Sbjct 779 TCCGCGTGCAAGTAGGTCTTTAAGGTTGACGGATGCTATCTTGAGCAGTTATTACTGTAA 838
Query 824 CGAGGTCAAGTATTCGGAGCTCACGCTCGATTCTTTTAGGATGCTTCAATGCTTAGAGTG 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGAGGTCAAGTATTCGGAGCTCACGCTCGATTCTTTTAGGATGCTTCAATGCTTAGAGTG 898
Query 884 GGAACCGAGTGGTTCACTATATCAATCAACTGGTGCAAAAATGGGTCTGAATGCTCCCGT 943
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 899 GGAACCGAGTGGTTCACTATATCAATCAACTGGTGCTAAAATGGGTCAGAATGCTCCCGT 958
Query 944 TGGAGTTTCTCGTATTAACTCCCAGAGCATGAATGATCCTACTTTGCCACCTAACCCTCG 1003
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGAGTTGCTCGTATTAACTCCCAGAGCATGAATGATCCTACTTTGCCACCTAACCCTCG 1018
Query 1004 CAAAGCTGTCCTTTATCGTCCATCCATAACACATTTTTTGGCTGTTTTGGCCACTATTTG 1063
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1019 CAAAGCTGTCCTTTATCGTCCATCCATAACACATTTTTTGGCTGTTTTGGCCACCATTTG 1078
Query 1064 TGAGGAGCTTCCTTCTCATGGCATTCTTTTATTATATCTGTCTGCTTCTGGCAAGAATGG 1123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 TGAGGAGCTTCCTTCTCATGGCATTCTTTTATTATATCTGTCTGCTTCTGGCAAGATTGG 1138
Query 1124 ACAGATTTCATCATCTCCTTTGAGTGCTAGAAGTGCAACCAATGTTGAGGAGAATATCTT 1183
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1139 ACAGATTTCATCATCTCCCTTGAGTGCTAGAAGTGCAACCAGTGTTGAGGAGAATATCTT 1198
Query 1184 GAGAGACTTTGAATCTCACACAATCAAACAAGAGAGAGACCCATCACTTCAAATTACCCC 1243
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||
Sbjct 1199 GAGAGACTTTGAATCTCACACAATCAAACAAGAGACAGAACCATCACTTCAAATTACGCC 1258
Query 1244 ATCTGGTCAGTCTTTGAGGCAAATCAGTGAGGACGCAGTCAGTACCCCATGTGGTCTGTC 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1259 ATCTGGTCAGTCTTTGAGGCAAATCAGTGAGGACGCAGTCAGTACCCCATGTGGTTTGTC 1318
Query 1304 TTTTGGCAGTCATGGGCTCACAGGATCAAGCTACATCTACCCCTCTGATTTAGTTCCATT 1363
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1319 TTTTGGCAGTCATGGGCTCACAGGATCAAGCTACATATATCCCTCTGATTTAGTTCCATT 1378
Query 1364 TACAAGGAAACCTCTTTTCATAATCATTGACAGTGATAGCAGCACAGTTTTTAAGAATAT 1423
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1379 TACAAGGAAACCTCTTTTCATAATCATTGACAGTGATAGCAGCACAGTTTTTAAAAATAT 1438
Query 1424 TTGTGGAGCGGAGAAAGGAGAACCAGCCGCATTGCTTCTGTCTCCATCACATACTCCTCC 1483
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1439 TTGTGGAGCGGAGAAAGGAGAACCAGCCGCGTTACTTCTGTCTCCATCACATACTCCTCC 1498
Query 1484 GCTTATTTCTGCTGATTTCTCTCGTCAACCTAGTGGTAGCCTTTTCACCATTTTTCTCAC 1543
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GCTTATCTCTGCTGATTTCTCTCGTCAACCTAGTGGTAGCCTTTTCACCATTTTTCTCAC 1558
Query 1544 GTCACCAGTCCAAGCGTTTTGCTTGTTAAGTGGGATTTCCGCCTCTGATATGGAAACGGA 1603
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1559 GTCACCAGTCCAAGCGTTTTGCTTGTTAAGTGAGATTTCCGCCTCTGATATGGAAACGGA 1618
Query 1604 TATCTTAACTAAGGCCGAGAAGCTTCTTTCCTCGTTTATGAACGAATGGGCTTCGACATT 1663
||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1619 TATTTTTACTAAGGCCGAGAAGCTTCTTTCCTCGTCTATGAACGAATGGGCTTCGACATT 1678
Query 1664 GGCAACATCAGATACCCTTCACCCAGTTTGGTCACAAATACTAAAAGATCCATTCTTGAG 1723
|||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 1679 GGCAACATCAGATACCCTTCACCCTGTTTGGTCACAGATACTAAAAGATCCCTTCTTGAG 1738
Query 1724 ACGACTACTCCTAAGATTCATATTCTGCCGGGCTGTCTTGGCACTGTACACTCCAGTCTT 1783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 ACGACTACTCCTAAGATTCATATTCTGCCGGGCTGTCTTGGCACTGTACACTCCAGTCTT 1798
Query 1784 CAATAACAAACAAAATCAGCCAGAGTGCTTTCCGTCTCTCCCAGAATCGCTAGTACCAAC 1843
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1799 CAATAACAAACAAAATCAGCCAGAGTGCTGTCCGTCTCTCCCAGAATCGCTATTACCAAC 1858
Query 1844 TGCTCCTGCCGTTCAATCCGCTGTGCTTCTGATGGCCAATGTATTTGGGGCTACAAGTAA 1903
||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 1859 TGCTCCTGCTGTTCAATCCGCTGTGTTTCAGATGGCCAATGTATTTGGTGCTACAAGTAA 1918
Query 1904 ATTTACTCTACCTCAAGATATCACAATGCTCGAAAGCTTCTAAGATGCT-ACCTCTGCGA 1962
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1919 ATTTACTATACCTCAAGATATCACAATGCTCGAAAGCTTCTAAGAAGCTTACCTCTGCGA 1978
Query 1963 CGATAAGAGCTTCGGTCTGAAAATATTCTT-TTGCAAATTGGGAATCTCGATTTGGTTTC 2021
|||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||
Sbjct 1979 CGATAAGAGCTTCGGTCTGAAA-TATTCTTGTT-CAAATCGGGAATCTCGATTTGGTTTC 2036
Query 2022 CCCTTAGGGTAAACTATGGTTTTAGATTTGGAGAATGCTTCTTCCATGTCATTGGAGCAT 2081
|| || |||| ||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 2037 CCGGTAAGGTATACTAT--TATTAGATTTGGAGAATGCTTCTTCCATGTCATTGGAGCAT 2094
Query 2082 TATGACCAAACATCTTTTGAGATTTATGGTTCAAGAACATTTTGGTGTGC-CAAATTAAC 2140
|||||| |||||||||||||||| ||||| ||||| |||||||||||| |||| |||
Sbjct 2095 TATGACTGAACATCTTTTGAGATTAATGGTGCAAGATCATTTTGGTGTGAACAAAGTAA- 2153
Query 2141 AAAGTGTTTGATGCAGAACATGT 2163
||||||||||||||||||||
Sbjct 2154 ---GTGTTTGATGCAGAACATGT 2173
Score = 119 bits (64), Expect = 1e-25
Identities = 97/111 (87%), Gaps = 9/111 (8%)
Strand=Plus/Plus
Query 2163 TTGTATATTGATTCAACTTTTACAGTCTAATGGAAATTCAACATCTACTGTAATTCGGTC 2222
||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 2222 TTGTATATTGA-TCAACTTTTACAGTCTAATGGAAATTCACCATCTTCTGTAATTCGATC 2280
Query 2223 AAGAGAATAAGAGGTTCACCATCTGAACACTGTTGATTGCGTTGTCGGTAT 2273
||| |||||||||||||||| ||| | | |||||||||||||||||
Sbjct 2281 GAGAAAATAAGAGGTTCACCA-CTG-----T-T-GATTGCGTTGTCGGTAT 2323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112800624615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5