BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477604
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03590.1 | Symbols: | SWIB/MDM2 domain superfamily protein ... 1057 0.0
> AT3G03590.1 | Symbols: | SWIB/MDM2 domain superfamily protein
| chr3:865183-867008 REVERSE LENGTH=929
Length=929
Score = 1057 bits (572), Expect = 0.0
Identities = 713/774 (92%), Gaps = 38/774 (5%)
Strand=Plus/Plus
Query 39 TTAATCCTTGAAAGTTGAAAGCTTTGGTATCAAAATGACAAGTTTCAAATCTCAAACGTC 98
||||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||||
Sbjct 173 TTAATCCTTGAAAGTTGAAAGCTTTAGTGTCAAAA-GACAAGTTTCATATCTCAAACGTC 231
Query 99 GCCACGTGGCAGAGTCAAAGGTCAAACCTTTTTCTCCCAAAAACTTACTTTCCTAAATTC 158
| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 232 GTCACGTGGCAGAGTCAAAGGTCAAACCTTTTTCTCCC-AAAA---ACTTTCCTAAATTC 287
Query 159 TCCAAAATCACACTCTCGGAGAAGGAGAAG----aa--a-a------a-aaaaTGTCTTC 204
||||||||||||||||| | |||||||||| || | | | |||||||||||
Sbjct 288 TCCAAAATCACACTCTCAGCGAAGGAGAAGAAAAAACTAGATTGGCGAGAAAATGTCTTC 347
Query 205 CGTTGCAGCTATGGTTTTCAGGGGAGCTAGATCGCTTCTAGCTCCTGCTTCTCGAGCCAC 264
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 348 CGTTGCAGCTATGGTTTTCAGAGGAGCTAGATCGCTTCTAGCTCCTGCTTCTCGAGCCAC 407
Query 265 CTCTTCTTTGGTTTCAGCTGGATCCACTAAGAAAACGGCGGCGAAAACAAAGGCCAAGGC 324
|||||||||||||||||||||||||||||||||| | |||||| |||| | |||||
Sbjct 408 CTCTTCTTTGGTTTCAGCTGGATCCACTAAGAAACCCGCGGCG-AAAC-----CAAAGGC 461
Query 325 CAAGGCTAAGCCTAAGCCAAAGGCGAAATCAGAGTCTCCGGCAAAGAAGACACCGAGGTC 384
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 462 CAAGGCTAAGCCTAAGCCAAAGGCGAAATCAGACTCTCCGGCAAAGAAGACACCGAGGTC 521
Query 385 TACCGGACTCTTTAAGGTGACTCCTGTGTCTCCAGTTCTCGCTCAGTTCCTTGGTACCGG 444
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TACCGGAATCTTTAAGGTGACTCCTGTGTCTCCAGTTCTCGCTCAGTTCCTTGGTACCGG 581
Query 445 TGAAACTA-CACGTACCGACGCCATCAAGGGGATTTGGACCTACATCAAATCCCACGATC 503
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 582 TGAAAC-ATCACGTACCGACGCCATCAAGGGGATTTGGACCTACATCAAGTCCCACGATC 640
Query 504 TTCAGAACCCAGCTGACAAGAGGGAGATTTTCTGCGATGAGACACTGAAGCTAATCTTTG 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TTCAGAACCCAGCTGACAAGAGGGAGATTTTCTGCGATGAGACACTGAAGCTAATCTTTG 700
Query 564 AAGGGAAAGACAAAGTTGGGTTTCTAGAGATTTCAAAACTCTTGTCCCCGCACTTTGTGA 623
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 701 AAGGGAAAGACAAAGTTGGGTTTCTGGAGATTTCAAAACTCTTGTCCCCGCACTTTGTGA 760
Query 624 AGACTGCTTGACCAA-TAACTAGCTTAGTTTGGAAACTCCTGA---TTTGGTTTTTGAGT 679
||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 761 AGACTGCTTGACCAAATAACTAGCTTAGTTTGGAAACTCCTGACGATTTGGTTTTTTAGT 820
Query 680 AAGCTCTTTCTGAGTGATCTTATCTTGTTAATGTTGTCAATATCTTTCAACTCTTTTCCT 739
||||||||| ||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 821 TAGCTCTTTCA-AGTGATCTTATCTTGTTAATGTTGTCAATATCTTTTAACTCTTCTCGT 879
Query 740 TCCTCTTCCCAAACATGGTTTGACACTTTGACTAATGAAGAAATATTTTGGCAT 793
|||| || ||||||||||||| || ||||||||||||||| |||||||||
Sbjct 880 TCCTGTTACCAAACATGGTTT-----TT-GACTAATGAAGAAATGTTTTGGCAT 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5