BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477605 Length=877 Score E Sequences producing significant alignments: (Bits) Value AT3G03600.1 | Symbols: RPS2 | ribosomal protein S2 | chr3:86766... 1471 0.0 > AT3G03600.1 | Symbols: RPS2 | ribosomal protein S2 | chr3:867660-868578 REVERSE LENGTH=919 Length=919 Score = 1471 bits (796), Expect = 0.0 Identities = 851/878 (97%), Gaps = 2/878 (0%) Strand=Plus/Plus Query 1 AATTCAGTCTGCGAATTTATCTTAAACCCTAACCCTCTCGCTGCCGTCCGGTGGTTTTTC 60 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AATTCAATCTGCGAATTTCTCTTAAACCCTAACCCTCTCGCTGCCGTCCGGTGGTTTTTC 60 Query 61 CGACGACGAACAATGACGATTCACGCTGCAGTAATCCAGAAGCTTCTGAACACCGGAGCA 120 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CGACGACGAACTATGACGATTCACGCTGCAGTAATCCAGAAGCTTCTGAACACCGGAGCA 120 Query 121 CATCTCGGCCGTCGCGCCGCCGAGCACCATTTCAAGCAATACGCTTACGGGACGCGTAAC 180 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CATCTCGGCCGTCGTGCCGCCGAGCACCATTTCAAGCAATACGCTTACGGGACGCGTAAC 180 Query 181 GGAATGACAATTATCGACTCCGACAAAACCCTAATTTGCCTCCGTAGCGCCGCTCATTTC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGAATGACAATTATCGACTCCGACAAAACCCTAATTTGCCTCCGTAGCGCCGCTCATTTC 240 Query 241 GTCGCTAATCTCGCCCACATGAGAGGTAACATCTTCTTCGTCAACACAAACCCTCTCTTC 300 |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 241 GTCGCTAACCTCGCCCACATGAGAGGTAACATCTTCTTCGTCAACACGAATCCTCTCTTC 300 Query 301 GACGAAATCATTGAGCTCACTTCTCGTCGGATCCAAGGCGATTCTTATAATCACAACCGT 360 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 301 GACGAAATCATTGAGCTCACTTCTCGTCGGATCCAAGGAGATTCGTATAATCACAACCGT 360 Query 361 GCGATGAATCTGTGGAAGATGGGAGGGTTTTTGACTAACAGTTACAGTCCTAAGAAGTTT 420 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 361 GCGATGAATCTGTGGAAGATGGGAGGGTTTTTGACTAACAGCTACAGTCCTAAGAAGTTT 420 Query 421 CGATCTAGGCACAAAAAGCTTTGCTTTGGTCCAACTACTATGCCTGATTGTGTCGTCGTG 480 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 421 CGATCTAGGCATAAAAAGCTTTGCTTTGGTCCAACTACTATGCCTGATTGTGTCGTTGTG 480 Query 481 TTTGATACTGAGAGGAAGAGTTCTGTGATACTTGAGGCCTCGAAGCTTCAGATTCCGGTT 540 |||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 481 TTTGATTCTGAGAGGAAGAGCTCTGTGATACTTGAGGCATCGAAGCTTCAGATTCCGGTT 540 Query 541 GTTGCAATTGTGGATCCGAATGTGCCATTGGAATTCTTTGAGAAGATTACGTATCCTGTG 600 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 541 GTTGCAATTGTGGACCCGAATGTGCCATTGGAGTTCTTTGAGAAGATTACGTATCCTGTG 600 Query 601 CCAGCTCGTGATTCGGTCAAGTTTGTGTATTTGTTCTGTAATGTGATCACCAAGTGCTTT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CCAGCTCGTGATTCGGTCAAGTTTGTGTATTTGTTCTGTAATGTGATCACCAAGTGCTTT 660 Query 661 GTGGCAGAACAGATGAAGTTGGGGATCAAAGATGGGAGCAAAGAAGATATGATGAAGGAT 720 |||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| Sbjct 661 GTGGCAGAACAGATGAAGTTGGGGATCAAAGAAGGGAGCAATGAAGATTTGATGAAGGAT 720 Query 721 TTAGCTGCTTGATTT-GATATTTGCAACAAAAGTATGAAACTTTATAGTTGTTTTTCTGA 779 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 721 TTAGCTGCTTGATTTTGATATTTGCAACAAAAGTATGAAACTTTACAGTTGTTTTTCTGA 780 Query 780 GTCTGGAATAATTGTTCTTCAGAATTGTGGTTTCTTCAACTTTGAAATTCTGAGTGtttt 839 |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| Sbjct 781 GTCTGGAATAATTGTTCTTCAGAATTGTGGTTACTTCAACTTTGAAATTCTGGGAGTTTT 840 Query 840 tttACACATGGATGATTTTGTTTCTGTGATGGATATTT 877 || |||||||||||||||||||||| |||||||||||| Sbjct 841 TT-ACACATGGATGATTTTGTTTCTCTGATGGATATTT 877 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42799493244 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5