BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477606
Length=1199
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03610.1 | Symbols: | ELMO/CED-12 family protein | chr3:868... 1929 0.0
> AT3G03610.1 | Symbols: | ELMO/CED-12 family protein | chr3:868791-871812
FORWARD LENGTH=1251
Length=1251
Score = 1929 bits (1044), Expect = 0.0
Identities = 1162/1216 (96%), Gaps = 20/1216 (2%)
Strand=Plus/Plus
Query 1 GGAAATTTGGCGGCGACAGTTTCCTTTGGGTTTCAGATTTCGTGAGCTTATTCTTACCTT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 17 GGAAATTTGGCGGCGACAGTTTCCTTTGGATTTCAGATTTCGTGAGCTTATTCTTACCTT 76
Query 61 TCTCTCGAAGGAAGCTCTCATCTTTTCACTCAGATCACGTTCCCTGGGCTTATTCGCTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TCTCTCGAAGGAAGCTCTCATCTTTTCACTCAGATCACGTTCCCTGGGCTTATTCGCTTG 136
Query 121 TATCTGTTGATATACAAGATGGCATCTGCTACTCTAAGAAGGCGGCTTCATCATGGGGAT 180
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||
Sbjct 137 TATCTGTTGATATACAAGATGGCATCTGCGACTCTGAGAAGGCGGCTTCATCACGGTGAT 196
Query 181 GTAGATGGGAGGAAGTATGAACGTTATGATGCAACAGACTCTGAAACTTTAAGCGAACCC 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 197 GTAGATGGGAGGAAGTATGAACGCTATGATGCAACAGACTCTGAAACTTTAAGTGAACCC 256
Query 241 TTGTTAGGAAGTAGTAGTACTGATAATAGTAGAGATGAGTACAATGAGGAGCGTACTCTG 300
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 257 TTGTTAGGAAGTAGTAGTACTGATAATAGTAGAAATGAGTACATTGAGGAGCGTACTCTG 316
Query 301 GAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTTCACTGGACGTTGATCTTTTCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 317 GAGGATATTTGGGAAGAAGAACGGAAGAGACAGCAAGTTCACTGGACGTTAATCTTTTCT 376
Query 361 CAGTTGATTGCACAATGGGCTCAGTGGATAGCCAAAATTGTCTTTGGATCTGGCTCACTT 420
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 377 CAGTTGATTGCACAGTGGGCTCAGTGGATAGCCAAAATAGTCTTTGGATCTGGCTCACTT 436
Query 421 TTTGGGAGGTTTCTT-CT-T-CCTACATTTGGTCAAATAGGTACTGGTGGGAGGCTAT-T 476
|||||||||||||| || | ||||||||||||||||||||||||||||||||||| | |
Sbjct 437 GTTGGGAGGTTTCTTTCTCTGCCTACATTTGGTCAAATAGGTACTGGTGGGAGGCT-TCT 495
Query 477 GCCACCGCCTCTTAGTATGTTGCAGGAAGAAAGGCTGAGAAACATTAAGCGAAGAATAGA 536
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 496 GCCACCACCTCTTAGTATGTTGCAGGAAGAAAGGCTGAGAAATATTAAGCGAAGAATAGA 555
Query 537 AATCCCATTTGATGGATCTCGAATGGAGCATCAAGATGCTCTTAGACAACTATGGAGACT 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 556 AATCCCATTTGATGGATCTCGAATGGAGCATCAAGATGCTCTTAGACAACTATGGAGGCT 615
Query 597 AGCTTATCCACAGAGGGAACTACCACCTCTTAAATCTGAACTCTGGAAGGAAATGGGTTG 656
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 AGCTTATCCACAGAGAGAACTACCACCTCTTAAATCTGAACTCTGGAAGGAAATGGGTTG 675
Query 657 GCAAGGAACAGACCCTTCAACAGATTTTCGAGGTGGAGGATATATATCACTGGAGAATCT 716
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 676 GCAAGGAACAGACCCTTCAACAGATTTTCGAGGTGGAGGGTATATATCACTGGAGAATCT 735
Query 717 AATCTTCTTTGCGAAGACCTATCCGGAATCTTTCCAGAGACTGTTACATAAACAAGATGG 776
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 736 AATCTTCTTTGCGAAGACCTATCCGGAATCATTCCAGAGATTGTTACATAAACAAGATGG 795
Query 777 AACAAGGGCCGAATGGGAATATCCTTTCGCGGTGGCTGGCATCAATATCTCATTCATGTT 836
||| || || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 796 AACTAGAGCGGAATGGGAATATCCTTTCGCGGTGGCTGGCATCAATATCTCATTCATGCT 855
Query 837 GGCACAAATGTTAGATCTTCAAGCAGGTAAACCATCAACAATAGCCGGAATAAGGTTCTT 896
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 856 GGCACAAATGTTAGATCTTCAATCAGGTAAACCATCAACAATAGCCGGGATAAGATTCTT 915
Query 897 GGGATTTCTGGAAGAAGACGAAATGGCATTCGATAATCTCTACTGTATAGCTTTCCAAAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 GGGATTTCTGGAAGAAGACGAAATGGCATTCGATAATCTCTACTGTATAGCTTTCCAAAT 975
Query 957 GATGGATGCACAATGGCTTGCTAAACGAGCTTCTTACATGGAATTTAATGACGTCCTGAA 1016
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 976 GATGGATGCACAATGGCTTGCTAGACGAGCTTCTTACATGGAATTCAATGACGTCCTGAA 1035
Query 1017 ATCGACGAGAGCACAATTGGAACGTGAGCTGGCACTGGATGATGTTTCAAGCATCAGAGA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1036 ATCGACGAGAGCACAATTGGAACGTGAGCTGGCACTGGATGATGTTTCAAGCATCACAGA 1095
Query 1077 CTTGCCTGCTTTCAATCTTTTGTACAAATAA-TTAATATAATTTTCCTATAATTTCTATC 1135
||||||||||||||||||||||||||||||| || || ||||| |||| ||||||||||
Sbjct 1096 CTTGCCTGCTTTCAATCTTTTGTACAAATAAATTGTTA-AATTT-CCTACAATTTCTATC 1153
Query 1136 TGTATTTA-A-A-TAAT-A----A----TTCAGTGTAACAAATAATCAGTTTTTGCTGAA 1183
|||||||| | | |||| | | ||||||||||||||||||||||||||||||||
Sbjct 1154 TGTATTTAGATAATAATTATCTGAGAAATTCAGTGTAACAAATAATCAGTTTTTGCTGAA 1213
Query 1184 ATTGCTCGGCAAATAT 1199
|||||||||||| |||
Sbjct 1214 ATTGCTCGGCAAGTAT 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58885239285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5