BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477608
Length=1731
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03640.1 | Symbols: GLUC, BGLU25 | beta glucosidase 25 | chr... 2774 0.0
> AT3G03640.1 | Symbols: GLUC, BGLU25 | beta glucosidase 25 | chr3:881006-884157
FORWARD LENGTH=1747
Length=1747
Score = 2774 bits (1502), Expect = 0.0
Identities = 1661/1737 (96%), Gaps = 13/1737 (1%)
Strand=Plus/Plus
Query 1 TGAAAAATGGCACTCAAAGCGATTCTCTTTCTGGGTTTATTTCTCGCCGTTATTA-CTTC 59
|||||||||||||||||||||||||||||| ||||||||||||||| ||| | || |||
Sbjct 17 TGAAAAATGGCACTCAAAGCGATTCTCTTTTTGGGTTTATTTCTCGTCGTGA-TAGTTTC 75
Query 60 TCCGATCACCGTCGAATGTGGAGCTGTGTGTCC-GCAGAGTTCCCCGTTTGGTCGAGGAA 118
||||||||||||| | |||||||||||||||| || ||||||| |||||||||| ||||
Sbjct 76 TCCGATCACCGTCTACGGTGGAGCTGTGTGTCCGGC-GAGTTCCACGTTTGGTCGTGGAA 134
Query 119 GCTTTCCTGATGGTTTCTTGTTCGGTGCTTCAACTTCTGCTTTCCAGCATGAAGGTGCAC 178
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 135 GCTTTCCTGATGGTTTCTTGTTCGGTGCTACAACTTCTGCTTTCCAGCATGAAGGTGCAG 194
Query 179 CAGAAGAAGGAGGCCGAGGTTCCAGCATTTGGGACTCATTCACTCTT--A-AACATTCAG 235
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 195 CAGAAGAAGGAGGCCGAGGTTCCAGCATTTGGGACTCATTCACTCTTAAACAACATTCAG 254
Query 236 AAAGCAACAATAATCTTGATGGCAGGCTTGGAGTTGATTTCTATCATCAGTACAAGGAAG 295
|||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 255 AAAGCAACAACAATCTTGACGGCAGGCTCGGAGTTGATTTCTATCATCATTACAAGGAAG 314
Query 296 ATGTTCAACTATTGAAAAAACTGAACATGGATGCCTTTAGGTTCTCTATATCTTGGTCAA 355
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 315 ATGTTCAACTATTGAAAAAACTGAATATGGATGCCTTTAGGTTCTCTATATCTTGGTCAA 374
Query 356 GAATATTTCCCCATGGGAAAAAAGACAAGGGAGTGAGTGAAACAGGAGTTAAATTCTACA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GAATATTTCCCCATGGGAAAAAAGACAAGGGAGTGAGTGAAACAGGAGTTAAATTCTACA 434
Query 416 ATGATCTTATCAACGAGCTCATTGCAAATGGTGTAACGCCT-TTGGTTACATTGTTTCAA 474
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 435 ATGATCTTATCAACGAGCTCATTGCAAATGGTGTAACGCCTCTTG-TCACATTGTTTCAA 493
Query 475 TGGGATGTACCTCAGGCTCTTGAAGATGAATATGGTGGTTTCTTGAGTGACCGTATTTTG 534
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 494 TGGGATGTACCTCAGGCTCTTGAAGATGAATACGGCGGTTTCTTGAGTGACCGTATTTTG 553
Query 535 GAGGATTTCCGGGATTTTGCACAGTTTGCCTTCAATGAATATGGTGATAGAGTGAAGCAT 594
||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 554 GAGGATTTCCGTGATTTTGCACAGTTTGCTTTCAATAAATATGGTGATAGAGTGAAGCAT 613
Query 595 TGGGTTACTATAAACGAGCCTTATGAATTTAGTCGTGGTGGATACGAGACTGGAGAGAAA 654
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TGGGTTACTATAAACGAACCTTATGAATTTAGTCGTGGTGGATACGAGACTGGAGAGAAA 673
Query 655 GCACCAGGAAGATGTTCTAAATATGTCAATGAGAAATGTGTTGCAGGCAAGAGTGGTCAT 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 674 GCACCAGGAAGATGTTCTAAATATGTCAATGAGAAATGTGTTGCAGGCAAGAGTGGCCAT 733
Query 715 GAAGTTTACACCGTTAGTCACAATTTGCTGTTGGCTCATGCCGAAGCTGTGGAAGAATTC 774
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 734 GAAGTTTACACTGTTAGTCACAATCTGCTGTTGGCTCATGCCGAAGCTGTGGAAGAATTC 793
Query 775 AGGAAATGCGGAAAGTGCAAAGGTGGAAAGATCGGAATTGTTCAAAGTCCAATGTGGTTT 834
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 794 AGGAAATGTGGAAAGTGCACAGGTGGAAAGATCGGAATTGTTCAAAGTCCAATGTGGTTT 853
Query 835 GAGCCTTATGATAAGAAATCCAGCTCAAGTCCTTCAGAGGAGATAGTGAAGAGAGCTATG 894
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 854 GAGCCTTATGATAAGAAATCCACCTCGAGTCCTTCAGAGGAGATAGTGAAGAGAGCTATG 913
Query 895 GATTTCACTCTAGGCTGGCATATGGAACCAATAACACATGGAGATTACCCTCAGACCATG 954
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 914 GATTTCACTCTAGGCTGGCATATGGAGCCAATAACACATGGAGATTACCCTCAGGCCATG 973
Query 955 AAAGATGTTGTTGGTGGTCGATTACCATCTTTTACGCCTGAGCAGAAGGAGAAACTGAAG 1014
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 974 AAAGATGTTGTTGGTAGTCGATTACCATCTTTTACGCCCGAGCAGAAGGAGAAACTGAAG 1033
Query 1015 GGTTCTTATGATTTTGTCGGTATCAATTACTTCACTTCTACATTTGTTTCTCATGTAGAC 1074
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1034 GGTTCTTATGATTTTGTCGGTATCAATTACTTCACTTCTACATTTGTTGCTCATACGGAC 1093
Query 1075 AATGTTAATCCAGAGAAACCGAGTTGGGAAGCTGATTCTCGCTTGCAATTACATTCGAAT 1134
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1094 AATGTTAATCCAGAGAAACCGAGTTGGGAAGCTGATTCTCGCTTGCAGTTACATTCGAAT 1153
Query 1135 AACGTTGATGGGTTCAAGATTGGTTCTCAGCCGGCTACTGCGAAGTATCCAGTTTGCGCA 1194
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1154 AACGTTGATGGGTTCAAGATTGGTTCTCAGCCTGCTACTGCGAAGTATCCTGTTTGCGCT 1213
Query 1195 GACGGGTTAAGAAAAGTTTTGAAATACATCAAAGAGAACTATAACGACCCAGAAATCATA 1254
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1214 GACGGGTTAAGAAAAGTTTTGAAATACATCAAAGAGAACTACAATGACCCAGAAATCATA 1273
Query 1255 GTCACTGGAAATGGGTACAAGGAGAAACTTGAAGAGAAAGATGTGCTTCCCGATGCCCTC 1314
||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||
Sbjct 1274 GTCACTGGAAACGGGTACAAGGAGACACTTGAAGAGAAAGATGTACTTCCAGATGCCCTC 1333
Query 1315 AGCGATAGTAACAGGAAGTATTATCATATGAGACATCTCATGGCATTACATGGAGCAGTC 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 AGCGATAGTAACAGGAAGTATTATCATATGAGACATCTCATGGCATTACATGGAGCAGTC 1393
Query 1375 TGCGAGGACAAGGTTAATGTTAAAGGGTACTTTGTGTGGTCGCTTATGGATGGCCTAGAG 1434
|||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 1394 TGCGAGGACAAGGTTAATGTTAAAGGTTACTTTGTGTCGTCGCTTATGGATGGACTAGAG 1453
Query 1435 TGGGAAGATGAATACAAGACAAGGTCTGGACTGTACTATGTAGACTATGGACACAATTTG 1494
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1454 TGGGAAGATGGATACAAGACGAGGTCTGGACTGTACTATGTAGACTATGGACACAATATG 1513
Query 1495 GGACGGCATGAGAAACAATCTGCCAAGTGGCTCTCCAAGCTCCTTGAGAAAGTCCCGGAC 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 GGACGGCATGAGAAACAATCTGCCAAGTGGCTCTCCAAGCTCCTTGAGAAAGTCCCGGAC 1573
Query 1555 ACGATTCAGTCGAATGTAGATTCGGATTCAAGGAAAGAGTTATAAATGATCAGAGATCCT 1614
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 ACGATTCAGTCGAAGGTAGATTCGGATTCAAGGAAAGAGTTATAAATGATCAGAGATCCT 1633
Query 1615 CTTCGCAACTCTGTTTTACCGATCATATGATGTAATGTGTGTTTTTATCTTAAAAGAGTG 1674
||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1634 TTTCGCAACTCTGTTTAATCGATCATATGATGTTATGTGTGTTTTTATCTTAAAAGAGTG 1693
Query 1675 TAAGCCACGATATATGTAGTTTATATATATAATAAATGAAGAAGTAACTTATGTCAC 1731
||| ||||||| ||||||||||||||| |||| | | |||||||||||||| ||||
Sbjct 1694 TAATCCACGATCTATGTAGTTTATATA-ATAA-ATA--AAGAAGTAACTTATATCAC 1746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85591929225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5