BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477609
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03650.1 | Symbols: EDA5 | Exostosin family protein | chr3:8... 2431 0.0
> AT3G03650.1 | Symbols: EDA5 | Exostosin family protein | chr3:884133-886410
REVERSE LENGTH=1909
Length=1909
Score = 2431 bits (1316), Expect = 0.0
Identities = 1642/1789 (92%), Gaps = 64/1789 (4%)
Strand=Plus/Plus
Query 87 TGGATCTACACGATCTTTCTTTCCTCTTCTTCTATGAATCTGTTCATCGTAATTTCAGAT 146
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TGGATCTACACAATCTTTC-TTCCTCTTCTTCTATGAATCTGTTCATCGTAATTTCAGAT 195
Query 147 TCTTGATATATGATTCCTTTTCTCCAATCTCTTCTCTTAGTTTCTTCTCAGAGATGGGTG 206
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 196 TCTTGATATATGATTCCTTTTCTCCAATCTCTTCTCTTAG---C-TCTCAGAGATGGGTG 251
Query 207 AGAGATCAAACTCACGTTATCTCGGAGTAATCATCACTCGAAAATCTATAATTTTCTTG- 265
||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 252 AGAAAACAAACTCACGTTATCTCGGTGTAATCATCACTCGAAAATCTATAATTTTCTTGT 311
Query 266 TCGATATCGATCCTCACCGTCCTTTCTTGGTTCTTAATCTTTTCTTCCACAAACCCTAAC 325
|| ||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 312 TC-ATATCAATCATCACCGTCCTTTCTTGGTTTTTTATCTTTTCTTCCACAAACCCTAAC 370
Query 326 CGCGTTCTCGATTACATCTCAGTATCAGAATCCACAGATGTACCTCTCATCATCATCAAG 385
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CGAGTTCTCGATCACATCTCAGTATCAGAATCCACAGATGTACCTCTCATCATCATCAAG 430
Query 386 AACTCAAACACTTCTCCTCAAAACAACGCCATATCACCAAATCCCCAAAACAGAGAAGGA 445
|||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||
Sbjct 431 AACTCAAACAGTTCTCCACAAAACAACG------CACCAAAACCCCAAAACAGAGAAGGA 484
Query 446 GCACAAACAGAGGGACCTGA-TAATGAAAACAGAGGAGGAACAAAAACAGAGTCATCCAT 504
||| ||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 485 GCAGAAACAGAGGAACC-CATTAAAGAAAACAGAGGAGGAACAAAAACAGAGTCATCCAT 543
Query 505 GAATCAAAACAGAGTCAAAACCCTCCGGTGTATCCAGAA-GGTTTCTCCTTCTCCAAGGC 563
|||||||||||||| | ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 544 GAATCAAAACAGAGGCGAAACCCTCCGGTGTATCCA-AAGGGTTTCTCCTTCTCCAAGGC 602
Query 564 CATTGAAAGTCTACATGTATGATATGAGTCCAGAGTTTCACTTTGGGTTATTGGGTTGGA 623
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 603 CATTGAAAGTCTACATGTATGATATGAGTCCAGAGTTTCATTTTGGGTTATTGGGTTGGA 662
Query 624 AACCAGATAGAAACGACGTCGTTTGGCCAGATATCAGGGTCATTGTTCCTCACCATCCAG 683
||||||| ||||||| ||||||||||| |||||||| |||| |||||||||||||||||
Sbjct 663 AACCAGAGAGAAACGGTGTCGTTTGGCCTGATATCAGAGTCAATGTTCCTCACCATCCAG 722
Query 684 GTGGTCTTAACTTGCAGCATAGTGTTGAGTACTGGCTAACATTAGATCTTTTGTTCTCTG 743
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 723 GTGGTCTTAACTTGCAGCACAGTGTTGAGTATTGGCTCACATTAGATCTTTTGTTCTCTG 782
Query 744 AGCTTCCAGAAGATTCTAGAAGCTCTCGGGCCGCGGTACGTGTAAAGAACTCGAGTGAAG 803
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 783 AGCTTCCAGAAGATTCTAGAAGCTCTCGGGCCGCGATACGTGTAAAGAACTCGAGCGAAG 842
Query 804 CGGATGTAGTGTTCGTGCCGTTCTTCTCTTCATTGAGCTATAACCGATTCTCTAAGGTTA 863
| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 843 CTGATGTCGTGTTCGTGCCCTTCTTCTCTTCATTGAGCTATAACCGATTCTCTAAGGTTA 902
Query 864 ACCAAAAGCAGAAGAAGAGCCAAGACAAAGAGTTGCAGGTAAATGTGGTGAAATACGTAA 923
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 903 ACCAAAAGCAGAAGAAGAGCCAGGACAAAGAGTTGCAGGAAAATGTGGTGAAATACGTAA 962
Query 924 CGTCTCAAAAAGAGTGGAAGATCTCAGGAGGGAAGGATCATGTGATAATGGCACATCATC 983
|||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct 963 CGTCCCAAAAAGAGTGGAAGACCTCAGGAGGGAAGGATCATGTGATCATGGCGCATCATC 1022
Query 984 CGAATAGTATGTCGACGGCAAGGCATAAGCTATATCCGGCGATGTTTGTGGTCGCTGACT 1043
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1023 CGAATAGTATGTCGACGGCAAGGCATAAGCTATTTCCGGCGATGTTTGTGGTCGCTGACT 1082
Query 1044 TTGGTAGATACTCACCACATGTTGCCAATATTGATAAAGACATTGTTGCTCCATACAAAC 1103
||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 1083 TTGGTAGATACTCGCCACATGTTGCCAATGTTGACAAAGACATTGTGGCTCCATACAAAC 1142
Query 1104 ACCTTGTTCCATCGTACGTTAATGACACATCGGGCTTTGATGGCCGTCCGATCTTGCTCT 1163
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 ACCTTGTTCCATCGTATGTTAATGACACATCGGGCTTTGATGGCCGTCCGATCTTGCTCT 1202
Query 1164 ACTTCCAAGGAGCCATCTACCGCAAAGCTGGTGGATTTGTGAGACAAGAGCTATATAA-- 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 ACTTCCAAGGAGCCATCTACCGCAAAGCTGGTGGATTTGTGAGACAAGAGCTATATAATC 1262
Query 1222 -----A--GATG---------TCCACTTCTCTTTTGGCAGCGTAAGGAACCACGGCATAA 1265
| || | ||||||||||||| || |||||||||||||||||||||
Sbjct 1263 TTCTCAAAGAAGAAAAAGACGTCCACTTCTCTTTCGGAAGCGTAAGGAACCACGGCATAT 1322
Query 1266 CTAAAGCCGGAGAAGGAATGAGATCGTCCAAGTTCTGCCTCAACATAGCCGGGGATACTC 1325
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1323 CTAAAGCCGGCGAAGGAATGAGATCGTCCAAGTTCTGTCTCAACATAGCCGGGGATACAC 1382
Query 1326 CGTCTTCGAATCGCCTCTTTGACGCCATAGCTAGTCACTGTATTCCTGTGATCATTAGCG 1385
| || |||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 1383 CATCCTCGAATCGCCTCTTCGACGCCATAGCTAGTCACTGTATACCCGTGATCATTAGCG 1442
Query 1386 ATGACATCGAGTTACCATATGAGGATGTCCTCAACTACAACGAGTTCTGTCTCTTTGTCC 1445
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1443 ATGACATCGAGTTACCATATGAGGATGTCCTCAACTACAATGAGTTCTGTCTCTTTGTCA 1502
Query 1446 GATCATCAGACGCTTTAAAGAAAGGGTTTCTGATGGGTCTTGTGAAGAGTATTGGGAGAG 1505
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 1503 GATCATCAGACGCTTTAAAGAAAGGGTTTCTGATGGGTCTTGTCAGGAGTATTGGCAGAG 1562
Query 1506 AAGAGTATAATAAGATGTGGCTGCGGTTGAAAGAAGTGGAGAGGTATTTCGATTTGCGTT 1565
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1563 AAGAGTATAATAAGATGTGGCTTCGGTTGAAGGAAGTGGAGAGGTATTTCGATTTGCGTT 1622
Query 1566 TTCCG-TCCAAGGATGACGAAGGAGATTATGCAGTTCAGATGATTTGGGAAGCTGTTGCG 1624
||||| | ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1623 TTCCGGTG-AAGGATGACGAGGGAGATTATGCAGTTCAGATGATTTGGAAAGCTGTTGCC 1681
Query 1625 AGGAAAGCTCCTTTGGTGAAGATGAAGGTTCATAGGTTTCAAAGGTACACAAAGCCTTTT 1684
|||||||||||||||||||||||||||||||| || ||||| |||| |||| |||||||
Sbjct 1682 AGGAAAGCTCCTTTGGTGAAGATGAAGGTTCACAGATTTCAGAGGTTTACAAGGCCTTTT 1741
Query 1685 TAGGGGTTT-TAGTGACATTTTGGGAA----AT--A--TAG-----T--T---T----T- 1720
||||| ||| || ||| |||||||||| || | ||| | | | |
Sbjct 1742 TAGGG-TTTCTAATGATATTTTGGGAATTTGATTTAGATAGAAAGATAATGAATACAGTT 1800
Query 1721 -C-AATTCAACTATGTGAATGTTTATTATAGTCAGCCATGTGAACAAAGAGGTTACTTGA 1778
| ||| |||| |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1801 TCCAATGCAACCATGTGAATGTTTATTACAGTCAGCCATGTGAAGAAAGAGGTTACTTGA 1860
Query 1779 TCTAGACGATGCACAATGGTTACGTGTGACATAAGTTACTTCTTCATTT 1827
||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1861 TCTAGACGATGCACAATGGTTACGTGTGATATAAGTTACTTCTTTATTT 1909
Score = 124 bits (67), Expect = 2e-27
Identities = 83/90 (92%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 1 CTTCGGCGTTTTCATCGTTTCTCATCTACCTC-AAACTTTTCTTATCACTCTAAT-AAAA 58
|||||||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||
Sbjct 1 CTTCGGCGTTTTCATCGTTTCTCATCTACCTCGAAA-TTTTCTCGTCACTCTAATCAAAA 59
Query 59 ATCTCACTTCGTTAATTTCTCGG-AAAAAT 87
|||||||||||||| |||||||| ||||||
Sbjct 60 ATCTCACTTCGTTATTTTCTCGGGAAAAAT 89
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5