BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477611
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 | ch... 684 0.0
> AT3G03660.2 | Symbols: WOX11 | WUSCHEL related homeobox 11 |
chr3:889509-892162 REVERSE LENGTH=900
Length=900
Score = 684 bits (370), Expect = 0.0
Identities = 406/424 (96%), Gaps = 0/424 (0%)
Strand=Plus/Plus
Query 1 ATGGACCAAGAACAAACCCCACAGAGCCCAACCGGCCATAGTCGTTCACCCTCATCCTCG 60
||||||||||||||||| ||||| ||||||||| |||||||||| |||||| |||||||
Sbjct 1 ATGGACCAAGAACAAACACCACATAGCCCAACCCGCCATAGTCGCTCACCCCCATCCTCC 60
Query 61 GCCTCCGGTTCCACCTCAGCAGAACCGGTTCGATCGCGATGGTCACCTAAACCGGAACAA 120
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 61 GCCTCCGGTTCCACCTCAGCAGAACCGGTTCGGTCCCGATGGTCACCTAAACCGGAACAA 120
Query 121 ATACTCATACTTGAGTCGATCTTCCACAGTGGTATGGTTAACCCTCCCAAAGAAGAGACG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATACTCATACTTGAGTCGATCTTCCACAGTGGTATGGTTAACCCTCCCAAAGAAGAGACG 180
Query 181 GTAAGAATAAGAAAGATGCTCGAGAAATTTGGCGCGGTGGGAGATGCAAATGTCTTTTAT 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 GTAAGGATAAGAAAGATGCTCGAGAAATTTGGCGCGGTGGGAGATGCAAATGTCTTCTAT 240
Query 241 TGGTTTCAAAACCGGCGGTCAAGATCCCGTCGGAGACAGCGACAGCTCCAGGCCGCAGCT 300
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 241 TGGTTTCAAAACCGGCGGTCAAGGTCCCGTCGGAGACAGCGACAGCTACAGGCTGCAGCT 300
Query 301 GCAGCCGCGGCCGCAACCACCAACACTTGTGACCAGACCATGATGGTGAGCAACAGCTTA 360
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GCAGCAGCGGACGCAACCACCAACACTTGTGACCAGACTATGATGGTGAGCAACAGCTTA 360
Query 361 CCACATCATAGTGGGAGTGATTTGGGGTTGGGAGGGTGTAGCACTTCTTCTAATTACTTA 420
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 361 CCACATCATAGTGGGAGTGATTTGGGGTTTGGAGGTTGTAGCACTTCTTCTAATTACTTA 420
Query 421 TTTG 424
||||
Sbjct 421 TTTG 424
Score = 660 bits (357), Expect = 0.0
Identities = 379/390 (97%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 424 GCTAGCTCTTCCTCTTCTTATGGTGGTGGATGTGATAATCAAAGCAATAGTGGCATGGAG 483
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GCTAGCTCTTCTTCTTCTTATGGTGGTGGATGTGATAATCAAAGCAATAGTGGCATGGAG 570
Query 484 AATCTCTTAACAATGTCAGGCCAAATGAGTTATCATGAAGTTAATCATCATCATTACCAA 543
||||||||||||||||| |||||||||||||| ||||||| || |||||||||||| |||
Sbjct 571 AATCTCTTAACAATGTCTGGCCAAATGAGTTACCATGAAGCTACTCATCATCATTATCAA 630
Query 544 AATCATAGCTCAAATGTCGCATCGATTTTGTGCCCATCTGATCAAAACTCCAATTTTCAC 603
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 631 AATCATAGCTCAAATGTCACATCGATTTTGTGCCCATCTGATCAAAACTCCAATTTTCAA 690
Query 604 TACCAACAAGGGGCTATAACGGTGTTTATCAACGGAGTTCCGACAGAAGTGACGAGAGGA 663
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 691 TACCAACAAGGGGCTATAACGGTGTTTATAAACGGAGTTCCGACAGAAGTGACGAGAGGA 750
Query 664 GGAATAGACATAAAAGCAACGTTTGGAGAAGATTTGGTTTTGGTGCATTCCTCAGGTGTT 723
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 GGAATAGACATGAAAGCAACGTTTGGAGAAGATTTGGTTTTGGTGCATTCCTCAGGTGTT 810
Query 724 CCTCTTCCTACTGATGAGTTTGGTTTTTTGATGCATAGCTTACAACATGGTGAAGCTTAT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 CCTCTTCCTACTGATGAGTTTGGTTTTTTGATGCATAGCTTACAACATGGTGAAGCTTAT 870
Query 784 TTCCTGGTTCCAAGACAGATATGAACTGGC 813
||||||||||||||||||| ||||||||||
Sbjct 871 TTCCTGGTTCCAAGACAGACATGAACTGGC 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5