BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477612
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03670.1 | Symbols: | Peroxidase superfamily protein | chr3... 1585 0.0
> AT3G03670.1 | Symbols: | Peroxidase superfamily protein | chr3:901841-903411
REVERSE LENGTH=1172
Length=1172
Score = 1585 bits (858), Expect = 0.0
Identities = 1047/1136 (92%), Gaps = 21/1136 (2%)
Strand=Plus/Plus
Query 21 CACTAT-TACAAAAACAAGATGAAGATTGCAAAGTTTTCTGTTCTACTCTTGATTTTATT 79
|||| | ||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 44 CACTTTCTACAAAAACAAGATGAAGATTGCAACGTTTTCTGTTCTACTCTTGCTTTTATT 103
Query 80 TATTTTCCCCGTGGCATTAGCGCAGCTAAAATTCGGGTTTTACAAAGAATCGTGCCCTGA 139
||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |
Sbjct 104 TATTTTCCCCGTGGCATTAGCGCAGCTGAAATTTAAGTTTTACAGTGAATCGTGCCCTAA 163
Query 140 TGCAGAGACAATCGTACAAAACCTGGTCCGCCAGC-GTTTTGGTAGTGATCCTACAATCA 198
||||||||| |||||| |||||||||| ||||||| | |||| | |||| ||| ||||||
Sbjct 164 TGCAGAGACTATCGTAGAAAACCTGGTTCGCCAGCAG-TTTGCTCGTGACCCTTCAATCA 222
Query 199 CTGCCGCCTTGACTCGGATGCATTTTCATGACTGTTTTGTCCAGGGCTGCGACGCTTCTC 258
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 223 CGGCCGCCTTGACTCGTATGCATTTTCACGACTGTTTTGTCCAGGGCTGCGACGCTTCTC 282
Query 259 TCCTCATAGACCAAACGACGTCTCAATC-ATCGGAAAAAACCGCCGGCCCAAACGGTAGC 317
|||||||||||| ||||||||||||| | ||||||||||| ||||||||||||| ||||
Sbjct 283 TCCTCATAGACCCAACGACGTCTCAA-CTATCGGAAAAAAACGCCGGCCCAAACTTTAGC 341
Query 318 GTGAGAGGGTTCGAGCTGATCGACGAGATCAAGACGGCACTCGAAGCTCAATGTCCCTCC 377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 GTGAGAGGGTTCGAGCTGATCGACGAGATCAAGACGGCACTCGAAGCTCAATGTCCCTCT 401
Query 378 AAGGTCTCGTGCTCCGACATAGTCACGCTCGCCACACGTGACTCCGTGTTCTTAGGCGGA 437
| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 402 ACGGTCTCGTGCTCCGATATAGTCACGCTCGCCACACGTGACGCCGTGTTCTTAGGTGGA 461
Query 438 GGGCCTAA-CTACACGGTCCCCACCGGACGTCGTGATGGCTTTGTGTCGAACCCTGAAGA 496
|| || || |||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 462 GGACC-AAGCTACGTGGTCCCCACCGGACGTCGCGATGGCTTTGTGTCGAATCCTGAAGA 520
Query 497 CGCCAATAG-GATCCTCCCTCCACCATTCATCTCCGTCGAAGGTC-TGTTAAGTTTCTTC 554
||||||| | ||||||||||||||||||||| ||||||||||| | |||||||||| |||
Sbjct 521 CGCCAAT-GAGATCCTCCCTCCACCATTCATATCCGTCGAAGG-CATGTTAAGTTTTTTC 578
Query 555 GGCAACAAAGGAATGAATGTTTTTGATGCCGTAGCTCTTTTGGGGGCGCACACGGTTGGG 614
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 579 GGCAACAAAGGAATGAATGTTTTTGATTCCGTAGCTCTTTTGGGGGCGCACACGGTTGGG 638
Query 615 GTCGCTTCTTGTGGTAATTTTATTGACCGGGCCACCAACTTTCAAGGAACCGGACTACCC 674
|||| ||||||||||||||| | ||||||| ||| |||||||||||||||||||| |||
Sbjct 639 ATCGCGTCTTGTGGTAATTTTGTGGACCGGGTCACGAACTTTCAAGGAACCGGACTGCCC 698
Query 675 GACCCATCCATGGACCCCTTTTTGGCTGGCAGGCTAAGGGACACATGTGCGGTTCCAGGC 734
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 699 GACCCATCCATGGACCCCACTTTGGCTGGCAGGCTAAGGAACACATGTGCGGTTCCAGGC 758
Query 735 GGCTTCGCGGCACTGGACCAGTCGATGCCAGTAAGGCCGGTCTCATTCGACAACTTGTTC 794
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 759 GGCTTCGCGGCACTGGACCAGTCGATGCCAGTAACGCCGGTCTCATTCGACAACTTGTTC 818
Query 795 TTTGGTCAGATCAGAGAGAGGAAAGGAATTTTG-TTAATTGACCAACTAATCGCGACCGA 853
||||||||||||||||||||||||||||||||| || ||||||||||| ||||| | |||
Sbjct 819 TTTGGTCAGATCAGAGAGAGGAAAGGAATTTTGCTT-ATTGACCAACTGATCGCAAGCGA 877
Query 854 CCCGGCCACTTCTGGTGTTGTGTTTCAGTACGCGGCCAACAATGAACTATTCAAACGTCA 913
||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 878 CCCGGCCACTTCTGGTGTTGTACTTCAGTACGCGTCCAACAACGAACTATTCAAACGTCA 937
Query 914 GTTCGCAATCGCGATGGTGAAGATGGGAGCCCTTGACGTGCTTACCGGTTCAGCTGGTGA 973
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 938 GTTCGCAATCGCAATGGTGAAGATGGGAGCCGTTGACGTGCTTACCGGTTCAGCTGGTGA 997
Query 974 GATCAGGACGAATTGTAGAGCATTCAACTAAAGCTTGATAACCTGTTTCTAAACCTGATT 1033
|||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||
Sbjct 998 GATCAGGACGAATTGTAGAGCATTCAACTAAAGCTTTATAACAAGTTTCTATATCTGATT 1057
Query 1034 ATTGAtt-tttttcttttcttttC-GCTTATGATGATGAATTGTGAATGGTGATTGTTTG 1091
||||||| |||||| || |||| |||| ||||||||||||||||||||||||||||||
Sbjct 1058 ATTGATTGTTTTTCCCTTAATTTCCGCTTCTGATGATGAATTGTGAATGGTGATTGTTTG 1117
Query 1092 CCTATATAATTATATGTATGTACGTATATCTTTAAAATAATGTTTGGTGAATCGAT 1147
|||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1118 CCTATATA-T-----GTATGTACGTATATCTTTAAAATAAGGTTTGGTGAATCGAT 1167
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 ACCTTTCTACAAGAACATAGCACTATTACA 30
||||||||||||||||||||||||||||||
Sbjct 8 ACCTTTCTACAAGAACATAGCACTATTACA 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5