BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477623
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03750.2 | Symbols: SUVR3, SDG20 | SET domain protein 20 | c... 1881 0.0
> AT3G03750.2 | Symbols: SUVR3, SDG20 | SET domain protein 20 |
chr3:939952-942094 FORWARD LENGTH=1672
Length=1672
Score = 1881 bits (1018), Expect = 0.0
Identities = 1458/1656 (88%), Gaps = 88/1656 (5%)
Strand=Plus/Plus
Query 6 GCGAGAGT---CACCACCGAAGAAGCGTTCTCTCGGAGAAGCTTCCGACATTATTCTGGC 62
|||||||| |||||||||||| ||||| ||| |||||||||||||||||||||| |||
Sbjct 36 GCGAGAGTCACCACCACCGAAGACGCGTTGTCTTGGAGAAGCTTCCGACATTATTCCGGC 95
Query 63 CACCAAACTATTTTTCCGATGTGCGAACTTAATTATTCCATGCCTAAACCCTCAAGAACT 122
| || | | |||| ||||||||||||| || ||| | ||||| |||||||||| ||||||
Sbjct 96 CGCCGATCGATTTCTCCGATGTGCGAATTTGATTCTCCCATGGCTAAACCCTCGAGAACT 155
Query 123 CGCCGTTGTCGCTCAAACCTGCAAAACCTTATCCCTAATTTCCAAATCTATAACCTTTCA 182
||||||||| ||||||||||||||||||||||||||||| || |||||| ||||| ||||
Sbjct 156 CGCCGTTGTTGCTCAAACCTGCAAAACCTTATCCCTAATCTCGAAATCTCTAACCATTCA 215
Query 183 CCGATCCCTTGACGCTGCACGATCCTTGGAAAACCTCTCAATCCCGTTTCACAACTCCAT 242
|||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 216 CCGATCTCTCGACGCTGCACGATCCTTGGAAAACATCTCAATCCCGTTTCACAACTCCAT 275
Query 243 CGATTCTCAACGATACGCTTACTTCATCTACACACCATTTCAGATTCCCGCGTCA--T-C 299
|||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||| | |
Sbjct 276 CGATTCTCAACGATACGCGTACTTCATCTACACACCTTTTCAGATCCCCGCTTCATCTCC 335
Query 300 TCCTCCGCCGCGACAATGGTGGGGA---GCTGCTACTGAATGTGGATCCGAGTCGAGACC 356
||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||
Sbjct 336 TCCTCCGCCGCGACAATGGTGGGGAGCTGCTGCTAATGAATGTGGATCGGAGTCTAGACC 395
Query 357 TTGTTTTGACTCAGTGAGTGAACGCGGACGTTTTGGGGTGAGTCTAGTGGACGAGTCAGG 416
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 396 TTGTTTTGACTCAGTGAGTGAAAGCGGACGTTTTGGGGTGAGTTTAGTGGACGAGTCAGG 455
Query 417 ATGCGAATGCGAGAGGTGTGAGGAAGGATACTGCAAGTGTTTAGCTTTCGTTGGGATGGA 476
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 456 ATGCGAATGCGAGAGGTGTGAGGAAGGATACTGCAAGTGTTTAGCTTTCGCGGGGATGGA 515
Query 477 GGAGATTGGTAATGAATGCGGGTCGGGTTGTGGATGCGGGTCGGATTGTTCGAACCGGGT 536
||||| | ||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 516 AGAGATAGCTAACGAATGTGGGTCGGGTTGTGGATGCGGGTCCGATTGTTCGAACCGGGT 575
Query 537 TACACAAAAGGGGATTTCGGTTAGTTTGAAGATTGTAAGAGATGAGAAGAAAGGTTGGTG 596
||| || |||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 576 TACGCAGAAGGGGGTTTCGGTTAGTTTGAAGATTGTGAGAGATGAGAAGAAAGGTTGGTG 635
Query 597 CTTGTACGCTGATCAGCTTATCAAGCAAGGCCAATTCATCTGTGAATATGCAGGTGAGCT 656
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 CTTGTACGCTGACCAGCTTATCAAGCAAGGCCAATTCATCTGTGAATATGCAGGTGAGCT 695
Query 657 ATTGACAACTGATGAAGCACATAGACGTCAAAACATTTACGACAAACTGAGATCAACACA 716
||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 696 ATTGACAACAGATGAAGCACGTAGACGTCAAAACATTTACGACAAACTCAGATCAACACA 755
Query 717 ATCTTTCGCGTCGGCTCTTTTGGTCATACGCGAACACCTCCCTTCAGGACAAGCTTGTTT 776
||| ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 756 ATCCTTCGCTTCAGCTCTTTTGGTCGTACGCGAACACCTCCCTTCAGGACAAGCTTGTTT 815
Query 777 AAGGATAAACATCGATGCCACAAGAATTGGGAACGTTGCTAGATTCATCAACCATTCTTG 836
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 AAGGATAAACATCGACGCCACAAGAATTGGGAACGTTGCTAGATTCATCAACCATTCTTG 875
Query 837 TGACGGCGGAAATCTCTCCACCGTTCTGTTGAGAAGCTCAGGAGCATTGCTTCCTAGGCT 896
|||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||
Sbjct 876 TGACGGTGGAAATCTCTCCACTGTTCTGTTGAGAAGCTCAGGAGCGTTGCTTCCTCGGCT 935
Query 897 CTGTTTCTTTGCAGCAAGGGACATAATTGCAGAGGAGGAGTTAAGTTTCAGTTATGGAGA 956
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 936 CTGTTTCTTTGCAGCAAAGGACATAATCGCAGAGGAGGAGTTAAGTTTCAGTTATGGAGA 995
Query 957 CGTCCGTGTCACCGGAGAGAACAGAGACAACAAGTTAAATTGCTGTTGTGGTAGTTCCTA 1016
||| |||| ||||||||||||||||| ||||| |||| |||| ||||||||||||||
Sbjct 996 CGTAAGTGTGGCCGGAGAGAACAGAGACGACAAGCTAAACTGCTCTTGTGGTAGTTCCTG 1055
Query 1017 CTGTTTTGGAACGTTGCCTTGTGAGAATACCTGATTTCATCATCAGTTCATCACCTTGTC 1076
|||||| ||||||||||||||||||||||||||| |||||||||| | | | | |||
Sbjct 1056 CTGTTTGGGAACGTTGCCTTGTGAGAATACCTGAATTCATCATCA-T-C-T----T-GTC 1107
Query 1077 TATCTATACTAATGTCCAAAACACTCTTATTATGTGAAAATTTTGAGCTT-TATGTTTCT 1135
| |||||||||||||||| |||||||||||| |||||| || ||| || ||||||| |
Sbjct 1108 TCGCTATACTAATGTCCAA--CACTCTTATTATTTGAAAAATTCGAG-TTCTATGTTTGT 1164
Query 1136 AGCAAATACAGCCAAGCACCGTCATTGTCATTCGGTAGTTACACTCTTTTTTAAAAAATA 1195
|||||| ||| |||||||||||||||||||||||| ||||||||| || || | || ||
Sbjct 1165 AGCAAACACAACCAAGCACCGTCATTGTCATTCGGAAGTTACACT-TTCTT-ATTAA-TA 1221
Query 1196 GCGATTCTACTGATGTGGAGAAAGAAAGGGAGAAATTTAGAA-T--T-CACGAAAATCAA 1251
||| ||||||||| ||||||| ||| ||| ||||||||||| | | ||||||||| ||
Sbjct 1222 GCGGCTCTACTGATTTGGAGAAGGAATGGGGGAAATTTAGAAGTAATTCACGAAAATGAA 1281
Query 1252 GTCAT-aaaat-ac-tc-t-aaat--t-----tt--gtgaaaaaaaagtatttttgaaaa 1297
|| ||||| | || | |||| | || |||||| |||| || |||||||||
Sbjct 1282 CCCACCAAAATGAAGTCATGAAATACTAAGAATTTCGTGAAATAAAACTAATTTTGAAAA 1341
Query 1298 tgacaaaagtaagaaaaaaagaaaagGGAGGA--A-TGTTGTGAAGATAAGGAGCACGAC 1354
|| |||| ||| | ||||| |||||||||||| | ||||||||||| ||||||||||||
Sbjct 1342 TGGCAAA-GTACGGAAAAA-GAAAAGGGAGGATTAATGTTGTGAAGAAAAGGAGCACGAC 1399
Query 1355 AGACATGAAGGTTGGTTAGATTAC-AAAGAACTCCACACGAAACGGTCAACACGATTCTC 1413
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1400 AGACATGAAGGTTGGTTAGCTTACTAAAGAACTCCACACGAAACGGTCAACACGATTCTC 1459
Query 1414 GTGCCTCTCCTCTCTCAGACA-TCT-A--T-----C---C------AG--A--CGAAATT 1451
||||||||||||||||||||| ||| | | | | | | |||||||
Sbjct 1460 GTGCCTCTCCTCTCTCAGACACTCTCACATATATACTTACTTCTCTATCCATACGAAATT 1519
Query 1452 ACG-A--A-TACGATACATAG-TTG----A--T-GCTA--CTATACAAGGTGTTATTAAT 1497
||| | | |||||||| ||| ||| | | |||| |||||||| ||||||||||
Sbjct 1520 ACGTACGAATACGATACTTAGATTGTGGTAGCTAGCTATACTATACAATTTGTTATTAAT 1579
Query 1498 CATTGTATCGTACATGATTTGTTTAACCTTTTGAGACAACTAACTTTGGTCTGATTTATC 1557
||||||||||||||| || |||| |||||||||||||| ||||||| ||||||||||||
Sbjct 1580 CATTGTATCGTACAT--TT-GTTTTACCTTTTGAGACAATTAACTTTCGTCTGATTTATC 1636
Query 1558 TTCCtttttttCCTTGAGATAAAGAACATTAATGTG 1593
|||||||||| |||| |||||||||||||| |||||
Sbjct 1637 TTCCTTTTTT-CCTTAAGATAAAGAACATTCATGTG 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78664254015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5