BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477634
Length=2838
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03810.1 | Symbols: EDA30 | O-fucosyltransferase family prot... 4590 0.0
> AT3G03810.1 | Symbols: EDA30 | O-fucosyltransferase family protein
| chr3:971672-976367 REVERSE LENGTH=2867
Length=2867
Score = 4590 bits (2485), Expect = 0.0
Identities = 2750/2872 (96%), Gaps = 41/2872 (1%)
Strand=Plus/Plus
Query 1 GAGTTCATAATATTGTGCAGAGTTTGTCTGTTAACAAAGCAACCCTCGTCGCAGGAAAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2 GAGTTCATAATATTGTGCAGAGTTTGTCTGTTAACAAAGCAACCCTCGTCGCAGGAAAAA 61
Query 61 T-ATATATAAAATTCCGTTCTTCGATTTCTGGAAAATCTGTCAGTGA-----GT-T--T- 110
| ||| ||||| || |||||||||||||||||||||||||||||||| || | |
Sbjct 62 TCATAAATAAATTTGCGTTCTTCGATTTCTGGAAAATCTGTCAGTGAGTCTTGTCTCCTA 121
Query 111 T--G------TCTC-C-T-CTCTTGATCTGACTCTGAATTAAATTCAACTAC-T--TGCT 156
| | |||| | | ||||||||||||||||||||||||||||||||| | | ||
Sbjct 122 TAAGTCTCCTTCTCTCTTCCTCTTGATCTGACTCTGAATTAAATTCAACTACTTCCTCCT 181
Query 157 CTGCCT-GCACGGGTTTTTTGTTTGTTTTCTCCTGGAAAGTTCG-A-TTGCGAGAAATCT 213
|||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 182 CTGCCTGGCACGGGTTTTTTGTTTGTTTTCTCCTGGAAAGTTCGAAGATGCGAGAAATCT 241
Query 214 CCAGTTTTTTAATCAGATCCTAAGCGTGCTTCGTTTCGAGGCTCTTTCACTGATAATTTA 273
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 242 CCAGTTTTTTAATCAGATCCTAAGCGTGCTTCGTTTCGAGGCTCTTTCAGTGATCATTTA 301
Query 274 CCTCGTTTGACCCTGGATCTCGCCTTGAATTGGGGTTCTTTAGCTGGGGAGAGAGCTCGA 333
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 302 CCTCGTTTGACCCTGGATCTCGCCTTGATTTGGGGTTCTTTAGCTGGGGAAAGAGCTCGA 361
Query 334 TTTCGGGCTGGTGGAAGATGGTGTTCAAATCTAGAATAAAATGGATTGCGCTTTTTGTGT 393
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 362 TTTCGGGCTGGTGGAAGATGGTGTTTAAATCTAGAATAAAATGGATTGCGCTATTTGTGT 421
Query 394 TGATCTTATCAATGGGATCTCTGGTTGTTCATCTTTCCATGACCAAGTCTTCAGGTGTAC 453
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 TGATCTTATCAATGGGATCTCTGGTTGTTCATCTTTCCATGACGAAGTCTTCAGGTGTAC 481
Query 454 AGTTGGCGTATTCTGCAAGAGATAACCTTTGGCAAGATTTTGATTCTTTGTTAGGCGCAC 513
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 482 AGTTGGCGTATTCTGCAAGAGATAACCTTTGGCAGGATTTTGATTCTTTGTTAGGTGCAC 541
Query 514 AGGATTTTAGAAATAAGCACTTATGGCGGCCTGTCAAATCGTTAGAGACCTTACAGCCTT 573
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 542 AGGATTTTAGAAATAAGCACTTATGGCGGCCTGTCAAATCGTTAGAGACCTTGCAGCCTT 601
Query 574 ATGCCAATCCAAGAAATAGTTATCCTGCACCCAGTTC-AACAAACAATCGTTTCATTTAT 632
|||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||||
Sbjct 602 ATGCCAATCCAAGAAATAGTTATCCTGCGCCCAGTTCGAA-AAACAATGGTTTCATTTAT 660
Query 633 GCAAAGATATTTGGTGGATTTGACAAGATAAGATCTTCTATATGTGATCTTGTCACCATA 692
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 GCAAAGATATTTGGTGGATTTGACAAGATTAGATCTTCTATATGTGATCTTGTCACCATA 720
Query 693 TCCAGGCTTCTTAATGCTACTCTTGTCATTCCAGAGCTTCAAGAAAGTCTTCGCTCAAAA 752
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCCAGGCTTCTAAATGCTACTCTTGTCATTCCAGAGCTTCAAGAAAGTCTTCGCTCAAAA 780
Query 753 GGCATTAGCAACAAGTTCAAGAGTTTCTCCTATCTTTATGATGAAGATCAGTTTATAGCC 812
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 GGCATTAGCAACAAGTTCAAGAGTTTCTCCTATCTTTATGATGAAGAGCAGTTTATAGCC 840
Query 813 TTTCTTAAAAATGATGTTATAGTTACGAAGACCCTTCCTGAGAGCTTGAAAGCCGCAAGA 872
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 841 TTTCTTAAAAATGATGTTATAGTTATGAAGACCCTCCCTGAGAGCTTGAAAGCCGCAAGA 900
Query 873 AAAAGGAATGAGTTCCCTCTTTTTAAGCCCAAAAACTCTGCATCACCAAAATATTACCTC 932
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 901 AAAAGGAATGAGTTCCCTCTTTTTAAGCCCAAAAACTCTGCGTCACCAAAATTTTACCTC 960
Query 933 GAGGATGTATTGCCAAAGTTAAAGAAAGCTAATGTTATTGGATTGATCGTCTCTGATGGA 992
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGGATGTGTTGCCAAAGTTAAAGAAAGCTAATGTTATTGGATTGATCGTCTCTGATGGG 1020
Query 993 GGATGCTTGCAGTCAACTTTGCCCGCTTCAATGCCTGAACTTCAAAGATTAAGGTGTAGA 1052
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGATGCTTGCAGTCAGCTTTGCCCGCTTCAATGCCTGAACTTCAAAGATTAAGGTGTAGA 1080
Query 1053 GTTGCCTTCCATGCCCTCCAGCTTCGTTCAGAAATCCAGGTGCTGGGCAAGAAGATGGTT 1112
||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||||||||
Sbjct 1081 GTTGCCTTCCATGCCCTCCAGCTTCGTCCAGAAATTCAGGTGCTGGCCAAGGAGATGGTT 1140
Query 1113 GACAGGTTACGTAAATCAGGTCAACCTTTCTTAGCTTATCATCCTGGCTTAGTAAGGGAG 1172
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1141 GACAGGTTACGTAAATCAGGTCAACCTTTCCTAGCTTATCATCCTGGCTTAGTAAGGGAG 1200
Query 1173 AAATTGGCATATCATGGTTGTGCTGAGCTTTTCCAGGATATTCACAGTGAACTCATCCAA 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAATTGGCATATCATGGTTGTGCTGAGCTTTTCCAGGATATTCACAGTGAACTCATCCAA 1260
Query 1233 TATCGGCGGGCTCAGATGATCAAGCAGAAGTTTATTTTAGAAGAACTTATTGTAGACTCA 1292
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1261 TATCGGCGTGCTCAGATGATCAAGCAGAGGTTTATTTTAGAAGAACTTATTGTAGACTCG 1320
Query 1293 CGCTTGCGCAGGGACAATGGCTTATGTCCTCTCATGCCAGAAGAGGTTGGAATTCTTTTG 1352
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CGCTTGCGCAGGGATAATGGCTTATGTCCTCTCATGCCAGAAGAGGTTGGAATTCTTTTG 1380
Query 1353 AAAGCATTGGGTTATTCTCAAAAAGCGATCATATACTTAGCTGGTTCTGAAATGTTTGGC 1412
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1381 AAAGCATTGGGTTATTCTCAAAAAGCGATCATATACTTGGCTGGTTCTGAAATATTTGGC 1440
Query 1413 GGCCAACGGGTTTTGATCCCTCTGCGTGCCATGTTCCCTAATTTAGTGGATCGGACTTCT 1472
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1441 GGCCAACGGGTTTTGATCCCTCTACGTGCCATGTTCCCTAATTTAGTGGATCGGACTTCT 1500
Query 1473 TTATGCAGCACGGAGGAATTATCAGAATTGGTTGGTCCTGAGACACCTCTTCCAGAGAAT 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTATGCAGCACGGAGGAATTATCAGAATTGGTTGGTCCTGAGACACCTCTTCCAGAGAAT 1560
Query 1533 ACATTTAAAATGCCTCCTCGAAAAAGCGATAAGCAACTCAAAGAAGAGTGGAACAAGGCA 1592
|||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1561 ACATATAAAATGCCTCCTCGAAAAAGCGATAAGCAGCTCAAGGAAGAGTGGAACAAGGCA 1620
Query 1593 GGTCCTCGACCTCGACCTCTACCTCCTCCTCCAGATAGACCTATCTACCAGCATGAAAAA 1652
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1621 GGTCCTCGACCTCGACCTCTACCTCCTCCTCCAGACAGACCTATCTACCAGCACGAAAAA 1680
Query 1653 GAAGGATGGTATGGTTGGCTGACAGAGAATGACACAGAACCAAGCCCTTCACCTATGGAT 1712
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1681 GAAGGATGGTATGGTTGGCTTACAGAGAATGACACAGAACCAAGCCCTTCGCCTATGGAT 1740
Query 1713 CTTAGGAATCAAGCACACAGGTTACTGTGGGATGCCCTCGATTTTGCTGTTTCTGTAGAA 1772
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1741 CTTAGGAATCAAGCACACAGGTTACTGTGGGATGCCCTTGATTTTGCTGTTTCTGTAGAA 1800
Query 1773 GCTGATGTGTTCTTCCCTGGTTTCAACAACGATGGTAGTGGGTGGCCAGATATTTCAAGT 1832
|||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 1801 GCTGATGTGTTCTTCCCTGGGTTCAACAACGATGGTAGTGGATGGCCAGATTTTTCAAGT 1860
Query 1833 TTGGTGATGGGTCAGAGGCTCTATGAAAGACCCTCTTCACGAACATATAGACTGGACAGG 1892
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 TTGGTGATGGGTCAAAGGCTCTATGAAAGACCCTCTTCACGAACATATAGACTGGACAGG 1920
Query 1893 AAAGTTATTCAAGAACTTTTCAACATTACTCGTGAGGACATGTACCATCCCAACCGTAAC 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 AAAGTTATTCAAGAACTTTTCAACATTACTCGTGAGGACATGTACCATCCCAACCGTAAC 1980
Query 1953 TGGACACTTCGTGTGAGGAAACATCTTAACTCGAGTTTGGGTGAAAGTGGGCTTATCAGG 2012
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1981 TGGACACTTCGTGTGAGGAAACATCTTAACTCAAGTTTGGGTGAAAGTGGGCTTATCAGG 2040
Query 2013 CAGTCTATGTTGTCAAAACCTAGGTCGTTCCTTTCGCATCCACTTCCTGAATGCTCATGC 2072
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 CAGTCTATGTTGTCGAAACCTAGGTCGTTCCTTTCGCATCCACTTCCTGAATGCTCATGC 2100
Query 2073 AGAACCTCGGCCCTTGAGGATTCCAGGCAAATACGGAGTGATGATGGTAGATTTCTCTAT 2132
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2101 AGAACCTCAGCCCTTGAGGATTCCAGGCAAATACAGAGTGATGATGGTAGATTTCTCTAT 2160
Query 2133 GGAGGTGAGGATGAATGCCCTAAATGGATAAAATCAGCGGGAGTGGAAAAGAGTAAAACT 2192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2161 GGAGGTGAGGATGAATGCCCTAAATGGATAAAATCAGCGGGAGTGGAAAAGAGTAAAACT 2220
Query 2193 GACGATAGTGATCAGCCTGATTATGAACATGACCTTCTCACTGAACAGTCAGAAACTGAA 2252
|| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 2221 GATGATGGTGATCAGCCTGATTATGACCATGACCTTCTCGCTGAACAGTCAGAAACTGAA 2280
Query 2253 GAAGAATTTGCAAAAAGTAAGGTAGCTTCAGCTTTTGACCAAGATGAAGAATGGGATCCT 2312
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2281 GAAGAATTTGCAAAAAGTAAGGTAGCTTCAGCTTTTGACCAAGATGAAGAGTGGGATCCT 2340
Query 2313 AATGACTAGCGTGACAACTATGCAAATTCTGTTGTGAGGTGCCATTTGATTTTTCCCAGA 2372
||||||||||||||| ||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 2341 AATGACTAGCGTGACTACTATGCAAATTCTGCTGTGAGGTGTTATTTGATTTTACCCAGA 2400
Query 2373 TTCTTTCAGGAAAGGCGAAGAAGCAAACATACGGAGGtttttttt-ttattt---acagt 2428
|||||||||||||||||||||||||||||||| |||||||||||| || ||| |||||
Sbjct 2401 TTCTTTCAGGAAAGGCGAAGAAGCAAACATACAGAGGTTTTTTTTATTGTTTTTTACAGT 2460
Query 2429 tcccggcttttttttttCCCTTTCTGAGAATAAGCTTTTAGTGTTATTCTTTTGTTAGTA 2488
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2461 TCCCGGCTTTTTTT---CCCTTTCTGAGAATAAGCTTTTAGTATTATTCTTTTGTTAGTA 2517
Query 2489 GCTCCTCGCAAGTTAGTTGCAAACTCTTTATACATCAAACCTTCTCAAAGATATCGGTAT 2548
|||||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 2518 GCTCCTTGCAAGTTAGTTGCATACTCTTTATACGTCAGACCTTCTCAAAGATATCGGTAT 2577
Query 2549 TGCCCCCGGACGCCCTTATGCATCGAAGGACGGACAACTGATGCAGCAAAGGATGTCCGT 2608
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2578 TGCCTCCGGACGCCCTTATGCATCGAAGGACGGACAACTGATGCAGCAAAGGATGTCCGT 2637
Query 2609 TATGCTTCATCCTTCTCTGAGGTCTTCCCTTGAAGCAAATGTGAAGCTGGAGGTATCTTT 2668
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2638 TATGCTTCATCCTTCTCTGAGGGCTTCCCTTGAAGCAAATTTGAAGCTGGAGGTATCTTT 2697
Query 2669 TGCTCTTCTTTTTCCCATCATTGTAAATCTGATTAA-GGTTCATATTCAGATTCTTTTAT 2727
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2698 TGCTCTTCTTTTTCTCATCATTGTAAATCTGATTAAAGGTTCATATTCAGATTCTTT-AT 2756
Query 2728 CCCTTTTTCTCCAATAGTTTTTT-CTGGATTTGTTTTGACACACTACAGATATAAAAGAT 2786
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 2757 CCCTTTTTCTCCAATAGTTTTTTTCTGGATTTGTTTTGACACACTACAGATA-AAA-GAT 2814
Query 2787 AAAGGTATATTTCAACAGAATATTAATATACACTTGCTGTCTCCTGGTTCAT 2838
||||||||||||||||||||| |||||||| ||||||||| ||||| |||||
Sbjct 2815 AAAGGTATATTTCAACAGAATTTTAATATAAACTTGCTGTGTCCTGATTCAT 2866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141019276773
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5