BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477636

Length=425
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03830.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   357    5e-98


> AT3G03830.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr3:979984-980488 REVERSE LENGTH=505
Length=505

 Score =  357 bits (193),  Expect = 5e-98
 Identities = 248/272 (91%), Gaps = 13/272 (5%)
 Strand=Plus/Plus

Query  1    ATCATCAACCACAAGCAATCCAGATCTTGAATCTCTTTAGTCCTTCCTTTGCTCTCATAC  60
            |||||||||||||||||||||  |    |||   ||||||||||||||||| || |||||
Sbjct  1    ATCATCAACCACAAGCAATCC--A----GAA---CTTTAGTCCTTCCTTTGATCCCATAC  51

Query  61   ATATTCAGAAGCTTCAAGAATCAAATC-TGGAGATAAGAAAATGGCTTTAGTGAGAAGTA  119
            ||||||||||||||| ||||||||| | |  ||| |||||||||||||| ||||||||||
Sbjct  52   ATATTCAGAAGCTTCGAGAATCAAA-CTTCTAGACAAGAAAATGGCTTTGGTGAGAAGTA  110

Query  120  TCTTCAGTGCAAAGAAGATTCTTGGTGGCTCTTTAGCAAGTACAAGCAAAGCACCAAAAG  179
            ||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||
Sbjct  111  TCTTCAGTGCAAAGAAGATTCTTGGCGGCTCCTTAGCAAGAACGAGCAAAGCACCAAAAG  170

Query  180  GTTTTCTTGCGGTGTACGTCGGTGAGAACCAAGAGAAGAAGCAGAGATACTTTGTACCAG  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  171  GTTTTCTTGCGGTGTACGTCGGTGAGAACCAAGAGAAGAAGCAGAGATACTTTGTACCAG  230

Query  240  TCTCATACTTGA-GCCAGCCTTCATTTCAGGC  270
            |||||||||||| || ||||||||||||||||
Sbjct  231  TCTCATACTTGAAGC-AGCCTTCATTTCAGGC  261


 Score =  217 bits (117),  Expect = 8e-56
 Identities = 134/142 (94%), Gaps = 2/142 (1%)
 Strand=Plus/Plus

Query  284  ATAACTTCTCGGATCCAATGATGACCGTCAGTAGGAAAAACAACAATTTTTCTTGTAAAT  343
            ||||||||| |||||||||||||| | |||||||||||||||| || |||||||||||||
Sbjct  350  ATAACTTCTAGGATCCAATGATGATCATCAGTAGGAAAAACAATAA-TTTTCTTGTAAAT  408

Query  344  AGATTGACAAATTTTCATCTTATTAACCAAAAGATTTGTTCCAAAGGATATGAAAGCCAG  403
            |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct  409  AGATTGACAAATTTTCATCTTATTAACCAAAAGATTTGTTCCAAAC-ATATGAAAGCCAG  467

Query  404  TTTTGTGTAAGAAACGATGCTA  425
            ||||||||||||||| ||||||
Sbjct  468  TTTTGTGTAAGAAACAATGCTA  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20157367349


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5