BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg477637

Length=596
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03840.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   573    6e-163
  AT3G03820.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   318    3e-86 


> AT3G03840.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr3:981072-981798 FORWARD LENGTH=727
Length=727

 Score =  573 bits (310),  Expect = 6e-163
 Identities = 382/416 (92%), Gaps = 8/416 (2%)
 Strand=Plus/Plus

Query  60   GACCCAAAACAGAACAACATTTTCATAACC-ATCAACAATAAGCAATCTAAAAACTCTAA  118
            |||||||||||||||||||| ||||| ||| || ||||||||||||||||| ||||||||
Sbjct  98   GACCCAAAACAGAACAACATCTTCAT-ACCTATTAACAATAAGCAATCTAAGAACTCTAA  156

Query  119  GCTTCaaaaaaaaTCAGGACTTATAAACAAAAATGGCTTTGGTGAGAAGTTTCTTTGTTG  178
            |||||  |||| |||| ||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  157  GCTTC--AAAAGATCAAGACTTATAAACAAAAATGGCTTTGGTGAGAAGTCTCTTTGTTT  214

Query  179  CAAAGAAGATATTTGGAGGCTCATTAGCCGGAACGAGGAAAGAAACTTCAGCACCAAAAG  238
            |||| |||||| |||||||||||||||| |||| ||| |||  |||||||||||||||||
Sbjct  215  CAAACAAGATACTTGGAGGCTCATTAGCAGGAATGAGAAAATCAACTTCAGCACCAAAAG  274

Query  239  GGTTTCTTGCAGTATACGTAGGGGAGAGCCAGAGGAAGCAAAGATACTTAGTGCCAGTCT  298
            ||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct  275  GGTTTCTTGCAGTGTACGTAGGGGAGAGCCAGAAGAAGCAGAGATACTTAGTGCTAGTCT  334

Query  299  CATACTTGAGGCAGCCATTGTTTCAAGATCTTCTCAGTAAATCCGAGGAAGAGTTCGGAT  358
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  335  CATACTTGAGCCAGCCATTGTTTCAAGATCTTCTCAGTAAATCCGAGGAAGAGTTCGGAT  394

Query  359  ATGATCATCCGATGGGCGGCTTGACGATCCCGTGTCCTGAAGATACCTTCCTCACAGTAA  418
             ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  395  TTGATCATCCGATGGGGGGCTTGACGATCCCTTGTCCTGAAGATACCTTCCTCACTGTAA  454

Query  419  CTTCTCGGATCCAAGGATGATGATCAT-TAAAGGaaaaaaaCTAAACACTTTTCTT  473
            ||||||||||||||||||||| ||||| | ||| |||||  || ||||||||||||
Sbjct  455  CTTCTCGGATCCAAGGATGATCATCATCTGAAG-AAAAA--CTTAACACTTTTCTT  507


 Score =  126 bits (68),  Expect = 2e-28
 Identities = 76/80 (95%), Gaps = 0/80 (0%)
 Strand=Plus/Plus

Query  516  TATGGAATCAAACAAAAGATCCAGAGAGATTTCTAACTTTTGTTTATATGATGTGTTTAT  575
            ||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||
Sbjct  640  TATGGAATCAAACAAAAGATCCAGACAGATTTCTAAGTTCTGTTTATATGATGTGTTTAT  699

Query  576  CAACAGTTATATACTAAAAA  595
            |||||||||||||||| |||
Sbjct  700  CAACAGTTATATACTATAAA  719


 Score =  104 bits (56),  Expect = 1e-21
 Identities = 58/59 (98%), Gaps = 0/59 (0%)
 Strand=Plus/Plus

Query  1   GGCAGACAGAAGCATGTGAAACTCTCAATTCATATACGTCCCCACAGTTTTCAACTATC  59
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1   GGCAGACAGAAGCATGTGAAACTCTCAATTCATATACGTCCCCACAGTTTTCAAATATC  59


> AT3G03820.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr3:976933-977223 REVERSE LENGTH=291
Length=291

 Score =  318 bits (172),  Expect = 3e-86
 Identities = 256/295 (87%), Gaps = 11/295 (4%)
 Strand=Plus/Plus

Query  151  ATGGCTTTGGTGAGAAGTTTCTTTGTTGCAAAGAAGATAT-TTGGAGGCTCATTAGCCGG  209
            ||||||||||| ||| ||||| | | |||||||||||| | |||| |||||| |||| ||
Sbjct  1    ATGGCTTTGGTAAGAGGTTTCATGGCTGCAAAGAAGAT-TCTTGGTGGCTCAGTAGCAGG  59

Query  210  AACGAGGAAAGAAACTTCAGCACCAAAAGGGTTTCTTGCAGTATACGTAGGGGAGAGCCA  269
            |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct  60   AACGAGGAAAGAAACTTCAGCACCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCA  119

Query  270  GAGGAAGCA--A-AGATAC-TTAGTGCCAGTCTCATACTTGAGGCAGCCATTGTTTCAAG  325
            ||||||| |  | ||| || || ||||| |||||||||||||  ||||| ||||||||||
Sbjct  120  GAGGAAGAAGCAGAGACACCTT-GTGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAG  178

Query  326  ATCTTCTCAGT-AAATCCGAGGAAGAGTTCGGATATGA-TCATCCGATGGGCGGCTTGAC  383
             ||| |||| | ||| | || ||||||||||||| | | |||||||||||||||||||||
Sbjct  179  CTCTACTCA-TCAAAGCTGAAGAAGAGTTCGGAT-TCAATCATCCGATGGGCGGCTTGAC  236

Query  384  GATCCCGTGTCCTGAAGATACCTTCCTCACAGTAACTTCTCGGATCCAAGGATGA  438
            |||||| |||||||||||||| |||||||| ||||| |||| |||||||||||||
Sbjct  237  GATCCCTTGTCCTGAAGATACTTTCCTCACTGTAACGTCTCAGATCCAAGGATGA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28683697937


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5