BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg477638 Length=1387 Score E Sequences producing significant alignments: (Bits) Value AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:99212... 1797 0.0 > AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:992128-994580 FORWARD LENGTH=1505 Length=1505 Score = 1797 bits (973), Expect = 0.0 Identities = 1107/1170 (95%), Gaps = 15/1170 (1%) Strand=Plus/Plus Query 222 AGTTTCATGGATTCTCGAGTTTCGATTCTCTTCGTCTGTGCGATAGCTGTGTCATGCTTT 281 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 332 AGTTTCATGGATTCTCGAGTTTCGATTCTCTTCGTCTGTGCAATAGCCGTGTCATGCTTT 391 Query 282 ACGTCCGGGTCCGCTTCATC-CCGAGTGGACTTTTCCGTTTGCAATTACGAATTCGAGGT 340 ||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| | Sbjct 392 ACGTCTGGGTCTGCTTCATCACC-AGTGGACTTTTCCGTTTGCAATTACGAATTCGAGCT 450 Query 341 CTTTCGATTCGATTTAGAAGCCAAATGTCCTCCTTCTCTCTATCCAAGTCCTCCTATTGA 400 ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| Sbjct 451 GTTTCGATTCGATTTAGAGGCCAAATGTCCTCCTTCTCTGTATCCAACTCCTCCTATTGA 510 Query 401 GGTAGATGGAGGCTCTCTGGACAGGGTAATGGATTCA-AATCATGGAAATGCTTATATGT 459 ||||||||||| ||| || |||||| |||||| |||| || ||||||||||||||||||| Sbjct 511 GGTAGATGGAGACTCACTAGACAGGCTAATGGCTTCACAA-CATGGAAATGCTTATATGT 569 Query 460 CAGTACTCTTTTATGCTTCCTGGTGCCCATTCTCACGTGCTGTGCGCCCTAAGTTCGATA 519 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 570 CTGTACTCTTTTATGCTTCCTGGTGCCCATTCTCACGTGCTGTGCGCCCTAAGTTTGATA 629 Query 520 TGTTGAGTTCGATGTTTCCTCAAATACAGCACCTAGCTGTGGAGCATTCTCAAGCACTGC 579 |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 630 TGTTGAGTTCCATGTTTCCTCAAATACAACACCTAGCTGTGGAGCATTCTCAAGCACTGC 689 Query 580 CATCTATCTTTTCTAGCTATGGTATCCATAGCTTACCTTCAATCCTGATGGTGAATCAAA 639 ||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 690 CATCTGTCTTTTCTAGGTATGGTATCCATAGCTTACCTTCAATCCTGATGGTAAATCAAA 749 Query 640 CTTTAAAGGCTCGGTACCATGGTCGAAAGGATCTTACATCCCTGATTGAGTTTTATGAAG 699 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 750 CTTTAAATGCTCGGTACCATGGTCGAAAGGATCTTATATCCCTGATTGAGTTTTATGAAG 809 Query 700 AGGCAACAGGTCTCCAACCTGTCCAGTATGTGGCTGAAGGGGAACCAACAGGCTTAGACG 759 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 810 AGGCAACAGGCCTCCAACCTGTCCAGTATGTGGCTGAAGGGGAACCAACAGGCTTAAATG 869 Query 760 CCGGCGATGGTAACTTGATCACATGGTTGCGCAACGGGACATCTATCAGAGAAATATTCA 819 |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 870 CCGGTGATGGTAACTTGATCACATGGTTGCGCAAGGGGACATCTATTAGAGAAATATTCA 929 Query 820 AACAAGATCCGTTCTTGGTACTATCTCTGCTGTTTATCTGTTTACAAATGGCAATCCTCG 879 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 930 AACAAGATCCGTTCTTGGTACTATCTCTGCTGTTTATCTGTTTACAAATGGCAATCCTTG 989 Query 880 TCTTCCCCATAGCTGAATCCCGCATGAAAGCGTTATGGGCTTCTTATGTTCCCAATCTGA 939 ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||| Sbjct 990 TCTTCCCCATAGCTGAATCCCGCATGAGAGCGTTATGGGCTTCTTACGTTGCCAATTTGA 1049 Query 940 ACCTGGAAAGATTTGGAGAGATAAGCCACCTGTTCAGCCGTGGTATTCACATGGTCGATG 999 || ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1050 ACTTGGGAAGATTTGGAGAGATAAGCCAACTGTTCAACCGTGGTATTCACATGGTCGATG 1109 Query 1000 TGAGGAGGTTATGGTTGAAACTAAGCCTCGTCAAAACAAGGAACTTCCATGAAAGAGCAA 1059 ||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct 1110 TGAGGAGGTTATGGTTGAAACTAAGTCTCGTCAAAACAAGAAACTTCCATGAAAGGGCAA 1169 Query 1060 AGAACGCACAAGCCTGGGCTTCATCGCTGGCATCTGTCTCTCTAGGCCAAACTTCATCAG 1119 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1170 AGAACGCACAAGCTTGGGCTTCATCGCTGGCATCTGTCTCTCTAGGCCAAACTTCATCAG 1229 Query 1120 ACCAATCCTGATCTTAAGGGTAAGATCCTGTCAGCATTGGGAAGAGATGAGCTTT-AAGT 1178 |||||||||||||| |||||||||||| |||||| |||||||||||||||||||| |||| Sbjct 1230 ACCAATCCTGATCTCAAGGGTAAGATCATGTCAGTATTGGGAAGAGATGAGCTTTTAAGT 1289 Query 1179 GTGTTCTGGAAATCTGAGAGTTCCTTTAATGAAACCCCTGTTATATGACTTTTTTGAGTT 1238 |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1290 GTGTGCTGGAAATCTGAGAGTTCCTTTAATGAA-----TGTTATATGACTTATTTGAGTT 1344 Query 1239 TGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGCTTCTGTTTGTGAATAT 1298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1345 TGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGCTTCTGTTTGTGAATAT 1404 Query 1299 CTATCTTTCTCCCTTTTTTGTTCTATAAATTTGAGATGTCTGTTTT-GGCCTCATTTCTT 1357 || | | |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1405 CT-T-T--CTCCCTTTTTTGTTCTATAAATTTGAGATGTCTGTTTTTGGCCTCATTTCTT 1460 Query 1358 TTACTGAATAATTTGATTGAGTCAGCTAAA 1387 ||||||||||||||||||||||||| |||| Sbjct 1461 TTACTGAATAATTTGATTGAGTCAGGTAAA 1490 Score = 206 bits (111), Expect = 6e-52 Identities = 193/230 (84%), Gaps = 16/230 (7%) Strand=Plus/Plus Query 1 GTGCTCCAGAATATT-AAAGATCGGGTGGTGCTATTTAAATCCAATATCAGAAACACATG 59 |||||||||||| || |||||||||||||||||||||||||||||||||||||||| | Sbjct 1 GTGCTCCAGAAT-TTGTAAGATCGGGTGGTGCTATTTAAATCCAATATCAGAAACACGTC 59 Query 60 GAACGAGACGAAT--AGCTACCTTCTGATTAAATTTTCAACTTTTGGCGTTTTTCGATCT 117 ||||||||| ||| ||||| ||||||| || | |||| || |||||||||| ||||||| Sbjct 60 GAACGAGACCAATAGAGCTAGCTTCTGA-TACA-TTTCGAC-TTTGGCGTTTCTCGATCT 116 Query 118 GTTGTTTCTGC-aaaaaaaaaaaaTTAGTGAATTTTCGGATCGGAGATTTCCCCAAATTG 176 ||||||||||| ||| ||||| || || ||||||||| ||||||||||||| | Sbjct 117 GTTGTTTCTGCTCCCAAATAAAAA-TAAAAAAAAATCGGATCGGGGATTTCCCCAAATCG 175 Query 177 TAAAATTAGGTTTTGTTCTTCGCCTCCTCGTTCTAGCCCTAGCTTAGTTT 226 ||||||||||||||||||||| | | | |||||||||||||||||| Sbjct 176 TAAAATTAGGTTTTGTTCTTCA--T--T--T-CTAGCCCTAGCTTAGTTT 218 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68322941745 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5