BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477638
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:99212... 1797 0.0
> AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:992128-994580
FORWARD LENGTH=1505
Length=1505
Score = 1797 bits (973), Expect = 0.0
Identities = 1107/1170 (95%), Gaps = 15/1170 (1%)
Strand=Plus/Plus
Query 222 AGTTTCATGGATTCTCGAGTTTCGATTCTCTTCGTCTGTGCGATAGCTGTGTCATGCTTT 281
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 332 AGTTTCATGGATTCTCGAGTTTCGATTCTCTTCGTCTGTGCAATAGCCGTGTCATGCTTT 391
Query 282 ACGTCCGGGTCCGCTTCATC-CCGAGTGGACTTTTCCGTTTGCAATTACGAATTCGAGGT 340
||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| |
Sbjct 392 ACGTCTGGGTCTGCTTCATCACC-AGTGGACTTTTCCGTTTGCAATTACGAATTCGAGCT 450
Query 341 CTTTCGATTCGATTTAGAAGCCAAATGTCCTCCTTCTCTCTATCCAAGTCCTCCTATTGA 400
||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||
Sbjct 451 GTTTCGATTCGATTTAGAGGCCAAATGTCCTCCTTCTCTGTATCCAACTCCTCCTATTGA 510
Query 401 GGTAGATGGAGGCTCTCTGGACAGGGTAATGGATTCA-AATCATGGAAATGCTTATATGT 459
||||||||||| ||| || |||||| |||||| |||| || |||||||||||||||||||
Sbjct 511 GGTAGATGGAGACTCACTAGACAGGCTAATGGCTTCACAA-CATGGAAATGCTTATATGT 569
Query 460 CAGTACTCTTTTATGCTTCCTGGTGCCCATTCTCACGTGCTGTGCGCCCTAAGTTCGATA 519
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 570 CTGTACTCTTTTATGCTTCCTGGTGCCCATTCTCACGTGCTGTGCGCCCTAAGTTTGATA 629
Query 520 TGTTGAGTTCGATGTTTCCTCAAATACAGCACCTAGCTGTGGAGCATTCTCAAGCACTGC 579
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 630 TGTTGAGTTCCATGTTTCCTCAAATACAACACCTAGCTGTGGAGCATTCTCAAGCACTGC 689
Query 580 CATCTATCTTTTCTAGCTATGGTATCCATAGCTTACCTTCAATCCTGATGGTGAATCAAA 639
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 690 CATCTGTCTTTTCTAGGTATGGTATCCATAGCTTACCTTCAATCCTGATGGTAAATCAAA 749
Query 640 CTTTAAAGGCTCGGTACCATGGTCGAAAGGATCTTACATCCCTGATTGAGTTTTATGAAG 699
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 750 CTTTAAATGCTCGGTACCATGGTCGAAAGGATCTTATATCCCTGATTGAGTTTTATGAAG 809
Query 700 AGGCAACAGGTCTCCAACCTGTCCAGTATGTGGCTGAAGGGGAACCAACAGGCTTAGACG 759
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 810 AGGCAACAGGCCTCCAACCTGTCCAGTATGTGGCTGAAGGGGAACCAACAGGCTTAAATG 869
Query 760 CCGGCGATGGTAACTTGATCACATGGTTGCGCAACGGGACATCTATCAGAGAAATATTCA 819
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 870 CCGGTGATGGTAACTTGATCACATGGTTGCGCAAGGGGACATCTATTAGAGAAATATTCA 929
Query 820 AACAAGATCCGTTCTTGGTACTATCTCTGCTGTTTATCTGTTTACAAATGGCAATCCTCG 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 930 AACAAGATCCGTTCTTGGTACTATCTCTGCTGTTTATCTGTTTACAAATGGCAATCCTTG 989
Query 880 TCTTCCCCATAGCTGAATCCCGCATGAAAGCGTTATGGGCTTCTTATGTTCCCAATCTGA 939
||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| |||
Sbjct 990 TCTTCCCCATAGCTGAATCCCGCATGAGAGCGTTATGGGCTTCTTACGTTGCCAATTTGA 1049
Query 940 ACCTGGAAAGATTTGGAGAGATAAGCCACCTGTTCAGCCGTGGTATTCACATGGTCGATG 999
|| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1050 ACTTGGGAAGATTTGGAGAGATAAGCCAACTGTTCAACCGTGGTATTCACATGGTCGATG 1109
Query 1000 TGAGGAGGTTATGGTTGAAACTAAGCCTCGTCAAAACAAGGAACTTCCATGAAAGAGCAA 1059
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 1110 TGAGGAGGTTATGGTTGAAACTAAGTCTCGTCAAAACAAGAAACTTCCATGAAAGGGCAA 1169
Query 1060 AGAACGCACAAGCCTGGGCTTCATCGCTGGCATCTGTCTCTCTAGGCCAAACTTCATCAG 1119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 AGAACGCACAAGCTTGGGCTTCATCGCTGGCATCTGTCTCTCTAGGCCAAACTTCATCAG 1229
Query 1120 ACCAATCCTGATCTTAAGGGTAAGATCCTGTCAGCATTGGGAAGAGATGAGCTTT-AAGT 1178
|||||||||||||| |||||||||||| |||||| |||||||||||||||||||| ||||
Sbjct 1230 ACCAATCCTGATCTCAAGGGTAAGATCATGTCAGTATTGGGAAGAGATGAGCTTTTAAGT 1289
Query 1179 GTGTTCTGGAAATCTGAGAGTTCCTTTAATGAAACCCCTGTTATATGACTTTTTTGAGTT 1238
|||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1290 GTGTGCTGGAAATCTGAGAGTTCCTTTAATGAA-----TGTTATATGACTTATTTGAGTT 1344
Query 1239 TGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGCTTCTGTTTGTGAATAT 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1345 TGATTTGTCTGCAACGAAGCATGTAAATCCAGGAACAGCTTTGCTTCTGTTTGTGAATAT 1404
Query 1299 CTATCTTTCTCCCTTTTTTGTTCTATAAATTTGAGATGTCTGTTTT-GGCCTCATTTCTT 1357
|| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1405 CT-T-T--CTCCCTTTTTTGTTCTATAAATTTGAGATGTCTGTTTTTGGCCTCATTTCTT 1460
Query 1358 TTACTGAATAATTTGATTGAGTCAGCTAAA 1387
||||||||||||||||||||||||| ||||
Sbjct 1461 TTACTGAATAATTTGATTGAGTCAGGTAAA 1490
Score = 206 bits (111), Expect = 6e-52
Identities = 193/230 (84%), Gaps = 16/230 (7%)
Strand=Plus/Plus
Query 1 GTGCTCCAGAATATT-AAAGATCGGGTGGTGCTATTTAAATCCAATATCAGAAACACATG 59
|||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GTGCTCCAGAAT-TTGTAAGATCGGGTGGTGCTATTTAAATCCAATATCAGAAACACGTC 59
Query 60 GAACGAGACGAAT--AGCTACCTTCTGATTAAATTTTCAACTTTTGGCGTTTTTCGATCT 117
||||||||| ||| ||||| ||||||| || | |||| || |||||||||| |||||||
Sbjct 60 GAACGAGACCAATAGAGCTAGCTTCTGA-TACA-TTTCGAC-TTTGGCGTTTCTCGATCT 116
Query 118 GTTGTTTCTGC-aaaaaaaaaaaaTTAGTGAATTTTCGGATCGGAGATTTCCCCAAATTG 176
||||||||||| ||| ||||| || || ||||||||| ||||||||||||| |
Sbjct 117 GTTGTTTCTGCTCCCAAATAAAAA-TAAAAAAAAATCGGATCGGGGATTTCCCCAAATCG 175
Query 177 TAAAATTAGGTTTTGTTCTTCGCCTCCTCGTTCTAGCCCTAGCTTAGTTT 226
||||||||||||||||||||| | | | ||||||||||||||||||
Sbjct 176 TAAAATTAGGTTTTGTTCTTCA--T--T--T-CTAGCCCTAGCTTAGTTT 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68322941745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5