BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477641
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03880.1 | Symbols: | Protein of unknown function (DUF1639)... 1170 0.0
> AT3G03880.1 | Symbols: | Protein of unknown function (DUF1639)
| chr3:997797-999261 FORWARD LENGTH=1007
Length=1007
Score = 1170 bits (633), Expect = 0.0
Identities = 804/881 (91%), Gaps = 34/881 (4%)
Strand=Plus/Plus
Query 75 TCTGCGTTTGCCAGTCAGATTCACCGGAACTTCTGGATA-GA-GATAGCTTCAAAAATGT 132
|||| |||||||| |||||||||||||||||||| | || || ||| | | ||||||||
Sbjct 140 TCTGTGTTTGCCAATCAGATTCACCGGAACTTCTAGTTAGGACGATTG--TGAAAAATGT 197
Query 133 CGTCATCGTTAGAACAAGAAATCTTCTTACAGTGGGGAAACAAGAAGAGATTGAGATGTC 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CGTCATCGTTAGAACAAGAAATCTTCTTACAGTGGGGAAACAAGAAGAGATTGAGATGTC 257
Query 193 TTAGAGCCAAAGACAAAAAGATCTCTCGCAGTAAAAACTCTTCTCGGTTTCTAGGTCAAG 252
|||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 258 TTAGAGCCAAAGCCAAAAAGATCTCTCGTTCTAAAAACTCTTCTCGCTTTCTAGGTCAAG 317
Query 253 ATACCTTCCTCCTTCAATCCACTAGATTCTCCAGAGGATCAGAAGGGGCAATCCTCAGAT 312
||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 318 ATACCGTCCTCCTTCAATCCTCTAGATTCTCCAGAGGATCAGAAGGAGCAATCCTCAGAT 377
Query 313 CTGGACTACCAGATCGCC---G---G---CCGGAGAAAGAAGAGAGGTATTATACGACGA 363
|||||||||||||||||| | | ||||||||||| |||||||||||||| ||||
Sbjct 378 CTGGACTACCAGATCGCCGGAGACCGTCTCCGGAGAAAGAGGAGAGGTATTATACTACGA 437
Query 364 GAGGTGTAGTTGATAGCATTGGGAAAGTTTGTTTAGATGAAAACAATAATAATGGAGAAG 423
|||||||||| |||| ||||||||||| ||||||||||| |||| || ||||||||||
Sbjct 438 GAGGTGTAGTGGATAACATTGGGAAAGATTGTTTAGATGGAAAC-AT--CAATGGAGAAG 494
Query 424 ATGGCAACAACAAGGAAGAGAGTATGTGGCCTAAGCTGTTTGTAACATTATCAAACAAAG 483
|| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 495 ATAGCAACAACAAGGAAGAGAGTATGTGGCCTAAGCTCTTTATAACATTATCAAACAAAG 554
Query 484 AGAAGGAAGAAGATTTCATGGCTATGAAAGGTTGCAAACCTTCTCATAGGCCTAAGAAGA 543
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 AGAAAGAAGAAGATTTCATGGCTATGAAAGGTTGCAAACCTTCTCATAGGCCTAAGAAGA 614
Query 544 GAGCCAAACTCATCCAAAGAAGCTTACTTTTGGTGAGTCCTGGAACATGGTTGGCTGATT 603
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GAGCTAAACTCATCCAAAGAAGCTTACTTTTGGTGAGTCCTGGAACATGGTTGGCTGATT 674
Query 604 TGTGCCCAGATAGATATGATGTTAGGGTGAAGAAGAGCTCTAAGAAGAGGCGAGCAAGAG 663
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 TGTGCCCTGATAGATACGATGTTAGGGTGAAGAAGAGCTCTAAGAAGAGGCGAGCAAGAG 734
Query 664 GGCTAAAAGCTATGGGAAATATGGAGACTGATTCAGATTGAGATGTTTTAAGATTAGTTT 723
|||||||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||
Sbjct 735 GGCTAAAAGCCATGGGAAACATGGAGACTGATTCAGATTGACAAGTTTTAAGATTAGTTT 794
Query 724 ATTAATTAGAAATGTTTGCGTATTGATCTAAGCTAACTTTCGTGGGTTTACCT-AAGCAA 782
| || ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 795 ACTA----GAAATGTTTGCGTATTGATTTAAGCTAACTTTCGTGGGTTT-CCTTAAGCAA 849
Query 783 TCTTAAAGAA-GTATTTTAGATGAAATTATTCGGTTGAGCATTTTGAATTATAATTCACA 841
|||| ||||| |||||||||||||||||||||||||||||| |||||| ||||
Sbjct 850 TCTTTAAGAATGTATTTTAGATGAAATTATTCGGTTGAGCACTTTGAA--------CACA 901
Query 842 AGGAAATATCATTTCTTTTGTGACAATGTATGTTCTTGTTGTAACTTGTAACTCTATCAA 901
|||| ||||||||||||| |||||||||||||| | |||||||||||||||| |||||
Sbjct 902 AGGATATATCATTTCTTT-GTGACAATGTATGTACCTGTTGTAACTTGTAACCCTATCCT 960
Query 902 AATCTATTGTTTCTGATAATGTACTGTT-GTCCTATTTGGC 941
||||||||||||| ||||||||||| || ||||||||||||
Sbjct 961 AATCTATTGTTTCAGATAATGTACT-TTAGTCCTATTTGGC 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5