BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477642
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03890.1 | Symbols: | FMN binding | chr3:999467-1002484 REV... 1504 0.0
> AT3G03890.1 | Symbols: | FMN binding | chr3:999467-1002484 REVERSE
LENGTH=1654
Length=1654
Score = 1504 bits (814), Expect = 0.0
Identities = 1010/1101 (92%), Gaps = 27/1101 (2%)
Strand=Plus/Plus
Query 334 AGAGACGTGTAAATCAAAGAACATCGAA-G----GTTTCGTGAGGAAGAAGATGAAGTCA 388
||||||||||||| ||||||||| |||| | |||||||| ||||||||||||||||
Sbjct 438 AGAGACGTGTAAACCAAAGAACAACGAAGGTTTCGTTTCGTGGGGAAGAAGATGAAGTCG 497
Query 389 CTTGTGGCCCATTTCTCAACGCCTTTAATCA-CGTCTAGATT-GTTCCCTACATGTCTTA 446
|||||||| |||||||||||||||||||||| || ||||||| ||| |||| |||| | |
Sbjct 498 CTTGTGGCTCATTTCTCAACGCCTTTAATCACCG-CTAGATTAGTT-CCTAGATGTATCA 555
Query 447 TTCATCGACCTTCAATCTCCGCCGTCAATTTTCCCACCGTCCGCCGCCGATATTCTCCTC 506
| |||||| ||||||||||||||||| |||| ||||||||||||| |||| ||||||||
Sbjct 556 TCCATCGAGCTTCAATCTCCGCCGTCTCTTTTTCCACCGTCCGCCGTCGATTTTCTCCTC 615
Query 507 TCACCATGGCCTCAGCAGCTCAGTCTTCTTCTCAGGCTGTATC--ACCTGGGAGTGTCAA 564
|||||||||||||||||||||||||||||||||||||||| || | | ||||||| |||
Sbjct 616 TCACCATGGCCTCAGCAGCTCAGTCTTCTTCTCAGGCTGTGTCTTA-C-GGGAGTGGCAA 673
Query 565 CAGTGATACAGATGTTTTCAAATTGATTCAAGCTCACGAGGAGAAGGCTGCTCGTCTTTC 624
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CAGTGATACAGATGTTTTTAAATTGATTCAAGCTCACGAGGAGAAGGCTGCTCGTCTTTC 733
Query 625 TCCAGTTGACGAAATCCGGACTGTTCTTAATGGTAGTGTTTGTGGTATGCTTTCCACTTT 684
||||| || |||||||| ||||| ||||||||||| | || |||||||||||||||||
Sbjct 734 CCCAGTCGAAGAAATCCGAACTGTGCTTAATGGTAGCATATGCGGTATGCTTTCCACTTT 793
Query 685 TTCTCAGAAATATGACGGTTATCCTTCAGGGTCAATGGTTGATTTTGCATGTGATGCTGA 744
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TTCTCAGAAGTATGAGGGTTATCCTTCAGGGTCAATGGTTGATTTTGCATGTGATGCTGA 853
Query 745 TGGTTCTCCGATTCTGGCAGTTAGTAGCTTGGCAGTTCATACAAAGGATCTGTTAGCTAA 804
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 854 TGGTTCTCCGATTCTGGCAGTTAGTAGCTTGGCAGTTCATACAAAGGATCTCTTAGCTAA 913
Query 805 TCCAAAATGCTCATTACTAATTGCTAGAGACCCAGAGGATAGGACCGGTTTGAGGATCAC 864
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 914 TCCAAAATGCTCATTACTAATTGCTAGAGACCCAGAGGATAGGACTGGTTTGAGGATCAC 973
Query 865 CCTACATGGTGATGCAGTGTTGGTTTCTGAAAAAGATCAAGCGGCTGTTCGATCTGCCTA 924
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 974 CTTACATGGTGATGCAGTGTTGGTTTCTGAAAAAGATCAAGCAGCTGTTCGATCTGCCTA 1033
Query 925 TTTAGCCAAGCATCCCAGTGCTTTCTGGGTTGATTTCGGGGACTTCAGTTTTATGCGAAT 984
||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1034 TTTAGCCAAGCATCCCAAAGCTTTCTGGGTTGATTTTGGGGACTTCAGCTTTATGCGAAT 1093
Query 985 CGAACCGAAAGTGGTCAGATATGTTTCAGGGATTGCAACTGCTTTTCTAGGATCTGGAGA 1044
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1094 TGAACCGAAAGTGGTCAGATATGTTTCAGGGGTTGCAACTGCTTTTCTTGGATCTGGAGA 1153
Query 1045 ATTCAGCAAAGAGAAGTACCAAGCAGCCAAAGTCGATCCTATAGCTCAGTATGCAAAGCC 1104
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1154 ATTTAGCAAAGAGGAGTACCAAGCAGCCAAAGTCGATCCTATAGCTCAGTATGCAAAACC 1213
Query 1105 TGTAACGTCTCACATGAATAAAGACCATGAAGAGGATACCAAAGCCATAGTACACAATGT 1164
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 1214 TGTAACGTCTCACATGAATAAAGACCATGAAGAGGATACCAAAGCCATTGTACATAATAT 1273
Query 1165 GACGTCCATACCTGTGGAGAGCGCCTTGATGCTTGATTTGGACAGCCTTGGTTTCAACGT 1224
|| |||||||||||||| |||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1274 AACATCCATACCTGTGGAAAGCGCCTTGATGCTGGATTTGGATAGCCTTGGTTTCAATGT 1333
Query 1225 TAAGGCTAGTCTTCAAGGGAATACCTTCAAGCTCCGAGTTCCATTCCCAAGACGCGCACA 1284
|||||||| |||||||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct 1334 TAAGGCTACTCTTCAAGGGAACACCTTCAAACTCCGAGTTCCGTTTCCAAGACGCGCACA 1393
Query 1285 AGACAGAAAGGATGTGAAGACACTAATAGTGGAAATGCTTCAAGCTGCTAAGCCTATTCC 1344
||||||||||||||| |||||| | || |||||||||||||||||||| ||| | ||
Sbjct 1394 AGACAGAAAGGATGTAAAGACATTGATTGTGGAAATGCTTCAAGCTGCCAAG--T---CC 1448
Query 1345 CAATTAGTTTGCTaaaaaaaaaGATGGAAAAGCTCTCTCTACCATCTGAAACCTGCTACA 1404
|||||||| ||||||| ||| |||||||||||||| || | ||||||| |||||||||
Sbjct 1449 -AATTAGTT-GCTAAAATAAA-GATGGAAAAGCTCT-TC--C-ATCTGAATCCTGCTACA 1501
Query 1405 ACAA-AAGAAGCTTCCTCCAA 1424
|||| || |||||||||||||
Sbjct 1502 ACAAGAA-AAGCTTCCTCCAA 1521
Score = 346 bits (187), Expect = 4e-94
Identities = 239/264 (91%), Gaps = 4/264 (2%)
Strand=Plus/Plus
Query 1 AATGGTGCTGAATAGTCGATTGGTGGAGACGACAGTTAATATGTCGGCGGATCTCTGGCA 60
||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 14 AATGGTGTTGAATAGTCGATTGGTGGAGACAACAGTTAATCTGTCGGCGGATCTCTGGCA 73
Query 61 ATATGTAGCATGTAACCCCGAGAGACTTCCTCGCGCCACCGTCCTCCATTTCATCTTCGG 120
|||||| || ||||||||||||| ||||||||||||||||||| |||||||||||||| |
Sbjct 74 ATATGTTGCGTGTAACCCCGAGATACTTCCTCGCGCCACCGTCATCCATTTCATCTTCTG 133
Query 121 CATCCCTCTCCTCCAACTCCGTCGTCTCGCTTCCTCTCTCGGATCATACCTCTGCTTCGA 180
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 134 CATCCCTCTCCTCCAACTCCGCCGTCTCGCTTCCTCTCTAGGATCATACCTATGCTTCGA 193
Query 181 TTCCGACGCCGGA-TTCGATCGCCGTACTCATAGCGATTAACTTTCCGGCGCATTTTCAA 239
||||| ||||||| || |||| |||||||||| ||||||| || ||||||| |||| |
Sbjct 194 TTCCGGCGCCGGAGTT-GATCACCGTACTCATTCCGATTAAGTTACCGGCGC-GTTTCCA 251
Query 240 CGGAATCGTCTGTTAATTTTCGAC 263
|||||||||||||| |||||||
Sbjct 252 -TGAATCGTCTGTTAAATTTCGAC 274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5