BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477645
Length=829
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03920.1 | Symbols: | H/ACA ribonucleoprotein complex, subu... 1297 0.0
> AT3G03920.1 | Symbols: | H/ACA ribonucleoprotein complex, subunit
Gar1/Naf1 protein | chr3:1008995-1010480 REVERSE LENGTH=838
Length=838
Score = 1297 bits (702), Expect = 0.0
Identities = 792/834 (95%), Gaps = 12/834 (1%)
Strand=Plus/Plus
Query 2 GTCGTCGCTCTCAATTAAACCCTAAAACCCTCCACTGAAGAGAGGCAGAGAGAAAGaaaa 61
||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||
Sbjct 8 GTCGTCGCTCTCAATTAAACCCTAAAACCCTCCTCAGAAGAGAGGCAGAGAG--A-AAAA 64
Query 62 aaaCGCAGTCTTTGAGGAATCTGAGAAAGGAGAAAAGATGAGACCACCGATGAGAGGCGG 121
|||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 65 AAACGCAGTCTTTGCGGAATCTGTGAAAGGAGAAAAGATGAGACCACCAATGAGAGGCGG 124
Query 122 CGGGGGTTTCCGTGGAAGGGGAGGACGAGACGGTGGTGGTGGCGGTAGATTCGGTGGAGG 181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 125 CGGGGGTTTCCGTGGAAGGGGAGGACGAGACGGTGGTGGTGGCGGTAGGTTCGGTGGAGG 184
Query 182 TGGCGGTCGATTCGGTGGAGGAGGAGGACGCTTTGGTGGTGGAGGCGGTCGCTTTGGTGG 241
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 AGGCGGTAGATTCGGTGGAGGAGGAGGACGCTTTGGTGGTGGAGGCGGTCGCTTTGGTGG 244
Query 242 TTTCAGAGACGAAGGTCCTCCTAGCGAAGTCGTGGAGGTCGCAACTTTCGTTCATGCTTG 301
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 245 TTTTAGAGACGAAGGTCCTCCTAGCGAAGTCGTGGAGGTTGCAACTTTCGTTCATGCTTG 304
Query 302 CGAGGGAGATGCTGTGACTAAACTCTCTA-ATGAGAAGATTCCTCATTTTAATGCTGCC- 359
|||||||||||||||||| |||||||| | | |||||||||||||||||||| ||| ||
Sbjct 305 CGAGGGAGATGCTGTGACCAAACTCTC-ACAGGAGAAGATTCCTCATTTTAACGCT-CCG 362
Query 360 ATCTACCTAGAGAACAAGACTCAGATTGGGAAAGTAGATGAAATCTTTGGCCCTATTAAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 363 ATCTACCTAGAGAACAAGACTCAGATTGGGAAAGTAGATGAAATCTTTGGCCCAATTAAT 422
Query 420 GAATCTTTGTTTTCTATCAAAATGATGGAAGGTATTGTAGCCACCTCCTATTCTCCAGGA 479
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 423 GAATCTTTGTTTTCTATCAAAATGATGGAAGGTATTGTAGCCACCTCGTATTCTCCAGGA 482
Query 480 GATAAGTTCTTCATCGACCCTTACAAGCTTTTGCCTCTCTCTCGATTCCTTCCCCAGCCA 539
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 483 GATAAGTTCTTCATCGACCCTTACAAGCTTTTGCCACTCGCTCGATTCCTTCCTCAGCCA 542
Query 540 AAGGGCCAGTCAACGGGTGGACGTGGAGGTGCAGGTCGTGGAAGGGGTGATGGTAGAGGT 599
||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 543 AAGGGTCAGTCAACGGGTGGACGTGGAGGTGCAGGTCGTGGAAGAGGTGATAGTAGAGGT 602
Query 600 CGTGGAAGAGGTGGATC-TTT--TAGAGGTAGAGGCGCTCCAAGAGGTGGTAGATTTCCA 656
||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 603 CGTGGAAGAGGTGGATCATTTAGTAGAGGTAGAGGTGCTCCAAGAGGTGGTAGATTTCCA 662
Query 657 CCACGCGGTGGCTCTCGTGGAAGCTTTAGAGGCCGGGGAAGATTTTAGATTCTTCTCCTA 716
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 663 CCACGCGGTGGCTCTCGTGGAAGCTTTAGAGGCCGAGGAAGATTTTAGGTTCTTCTCCTG 722
Query 717 CTTTATAAGCCTTATCCAAACTTGTACCCTTTGTTTTATCAATGACTATCGTTTTCCCAG 776
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
Sbjct 723 CTTTATAAGCCTTATCCAAACTTGTACCCTTTGTTTTATGAATGACTATCGTTCTCCC-G 781
Query 777 -ATTCTCAATTTTCAAGACTTTTGTTTAATCTATGGAGTaaaaaaaTTTGCATC 829
||||||||||||||||||||| |||| |||||||||||||||| |||||||||
Sbjct 782 TATTCTCAATTTTCAAGACTTTGGTTTTATCTATGGAGTAAAAATATTTGCATC 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40388254188
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5