BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477648
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03950.3 | Symbols: ECT1 | evolutionarily conserved C-termin... 2479 0.0
> AT3G03950.3 | Symbols: ECT1 | evolutionarily conserved C-terminal
region 1 | chr3:1021260-1024009 FORWARD LENGTH=1771
Length=1771
Score = 2479 bits (1342), Expect = 0.0
Identities = 1590/1704 (93%), Gaps = 40/1704 (2%)
Strand=Plus/Plus
Query 1 AAAGATCACCGCCTTACGTTAAA---G-AGGAAGACGAAGAAAACAAAAAAGAACGGAAC 56
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 49 AAAGATCACCGCCTTACGTTAAAGGGGAAGGAAGACGAAGAAAACAAAAAAGAACGGAAC 108
Query 57 TTTCTAAAA-----C-C-CACC---A---ctctctctctctGGGTTTTTCGAGGTTGCGT 103
||||||||| | | |||| | |||||||||||||||||||||||||||||||
Sbjct 109 TTTCTAAAACCCCCCACACACCAAAAGCGCTCTCTCTCTCTGGGTTTTTCGAGGTTGCGT 168
Query 104 TTGCTTTCGTTTGCCCAA-CTTCACAGACGTTTT-CTAGGGT-TTAAAGCTTATCCC-tt 159
|||||||| | ||||||| |||| || ||||| || | |||||||||||||| ||
Sbjct 169 TTGCTTTCATCTGCCCAACCTTC-TAG-GGTTTTCCT--TCTCTTAAAGCTTATCCCTTT 224
Query 160 tttttGCCTTCTCTCGACATGTCTGGAGCCGCTTCTTCTGATCGTCTCGCCACTAGCTTC 219
||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 225 TTTTTGCCTTCTCTCGATATGGCTGGAGCCGCTTCTTCTGATCGTCTCGTCACTAGCTTC 284
Query 220 CCTCTTCTGGAGACAGCAGATTTGTTTCAGGAGTTGTCTTTAGGTTCAGATGCAAATGAA 279
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 285 CCTCTTCTGGATACAGCAGATTTGTTTCAGGACTTGTCTTTAGGTTCAGATGCAAATGAA 344
Query 280 GTTCCTAGGAACCGTAATAAGGGTTCTTTTCAGCATCAGTATGGTCATGCACCTTATGGC 339
||||||| |||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 345 GTTCCTATGAACTTTACTAAGGGTTCTTTTCAGCATCCGTATGGTCATGCACCTTATGGT 404
Query 340 GCATCTTCTCATGGAAGTGAACGAAGGCCAAATATGAATGTTGGCAATCTGCTAAATGGT 399
||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||
Sbjct 405 GCATCTTCTCATGGAAGTGAAAGAAGGCCAAACATGAATGCTGGCAATCTGCTAAATGGT 464
Query 400 GGAGACTCGATTGGTTCATACCCGTGGGGTTACATCCCAGCAAACTATCCTTCTGGTGGC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GGAGACTCGATTGGTTCATACCCGTGGGGTTACATCCCAGCAAACTATCCTTCTGGTGGC 524
Query 460 TACCCGGATCCGATGTTTGGTTATGACCGCAACAGCAATCACAATTCCTTTTCACATCTC 519
||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 525 TACCCTGATCCGAGGTTTGGTTATGACCGCAACAGCAATCACAGTTCCTTTTCACATCTC 584
Query 520 ATGAATCCACACAGCTCACAAGAAGCACTGAGTTTTGACCAATTTGGATATAATGATCAT 579
||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct 585 ATGAATCCACACAGCTCACAAGAAGTACCAAGTTTTGACCAATTGGGATATAATGATCAT 644
Query 580 TTGTATTCCAACCATGGATTGTACGGACTTTACGGGAATGTAATTGACTCTGGTCATGCA 639
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 645 TTGTATTCCAACCATGGATTGTATGGACTTTACGGGAATGTAATTGACTCTGGTCATGCA 704
Query 640 TATGGAACTTTTGGCTATGATTCCTGGAAACTTGGGCGAGGATGGTATCCTGTTGATGGT 699
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 705 TATGGAACTTTTGGTTATGATTCCTGGAAACTTGGGCGAGGATGGTATCCCGTTGATGGT 764
Query 700 TATAGAAAGACCAGAAGCTTCAATCAAGGGCGTGGGTATAGTGATGAGAAAGCAGATAGG 759
|||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 765 TATAGAAAGACCAGAAGCTTCAATCATGGGCGTGGTTACAGTGATGAGAAAGCAGATAGG 824
Query 760 CTTAATGAGCTTTGTCGAGGACCAAGGAGTAGTGATTTCAAGAGTCCACAAGTTCTTAAC 819
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 825 CTTAATGAGCTATGTCGAGGACCAAGGAGTAGTGATTTCAAGAATCCACAAGTTCTTAAC 884
Query 820 TCTTCAATGCTAGAGGCAATGAAGCAAGATGTTTCAGCGGCAGATCTTCAGCGTTACAAC 879
|||||||||||||| |||||||||||||| |||||||| | |||||| ||||| |||||
Sbjct 885 TCTTCAATGCTAGATGCAATGAAGCAAGACGTTTCAGCAGTAGATCTCCAGCGCTACAAT 944
Query 880 GGGGAGAATTTCCCTGAAACATTCGTGAAAGCTAAATTCTTTGTGATCAAGTCTTACAGT 939
|||||||||||||||||| |||| |||||||| |||||||||||||||||||| |||||
Sbjct 945 GGGGAGAATTTCCCTGAATCATTTGTGAAAGCAAAATTCTTTGTGATCAAGTCATACAGC 1004
Query 940 GAAGATGATGTTCATAACAGTATTAAGTATGGTGCATGGTCGAGCACACCAACTGGCAAC 999
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GAAGATGATGTTCATAACTGTATTAAGTATGGTGCATGGTCGAGCACACCAACTGGCAAC 1064
Query 1000 AAGAAGTTGCATGCTGCATATTATGAAGCCAAAGAAAA-TGCCCAAGAATGCCCTGTGTA 1058
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1065 AAGAAGTTGAATGCTGCATATTATGAAGCCAAAGAAAACT-CCCAAGAATGCCCTGTGTA 1123
Query 1059 TCTTCTGTTCTCGGTGAATGCAAGTGGGCAATTTGTCGGTCTTGCAGAGATGGTAGGCCC 1118
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1124 TCTTCTGTTCTCGGTGAATGCAAGTGGGCAATTTGTTGGTCTTGCGGAGATGGTAGGCCC 1183
Query 1119 TGTTGATTTCAACAAGACAATGGAGTATTGGCAGCAAGATAAATGGATTGGTTGTTTCCC 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TGTTGATTTCAACAAGACAATGGAGTATTGGCAGCAAGATAAATGGATTGGTTGTTTCCC 1243
Query 1179 TGTGAAGTGGCATATCATCAAAGACATACCAAACAGTCTCTTGAGACACATAACACTTGC 1238
|||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 1244 TGTGAAGTGGCATATCATCAAAGACATACCAAACAGTCTCTTAAGACACATTACCCTGGC 1303
Query 1239 GAATAATGAGAACAAGCCAGTCACTAATAGCAGAGACACTCAAGAGGTTAATCTGGAGCA 1298
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1304 GAATAACGAGAACAAGCCTGTCACTAATAGCAGAGACACTCAAGAGGTGAATCTGGAGCA 1363
Query 1299 TGGGACTAAGATCATAAAGATCTTCAAGGAGTATATGAGCAAGACATGTATACTTGATGA 1358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TGGGACCAAGATCATAAAGATCTTCAAGGAGTATATGAGCAAGACATGTATACTTGATGA 1423
Query 1359 TTACAAGTTCTATGAGACAAGGCAAAAGATCATCAGAGATAAGAAGATCAAGCAAAAGAA 1418
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1424 TTACAAGTTCTATGAGACAAGGCAGAAGATCATCAGAGACAAGAAGATCAAGCAAAAGAA 1483
Query 1419 ACAGGCCCTTGATGGAGCTTCCGGGGAAACAATTAACTTGTGTTGAAAGCTGGAATCGAT 1478
||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||| ||
Sbjct 1484 ACAGGCCCTTGATGGAGCTTCGGGGGAAACAATTAACTTGAGTTGAAAGATGGAATCAAT 1543
Query 1479 GCAAGGAAAGAAGA---TGACTTAATTAAAAGAACTTAGTTTTTGGATCATGTTTTCCCT 1535
|||||||||||||| |||||||||||||||||||||||||| | || ||||||| ||
Sbjct 1544 GCAAGGAAAGAAGAAGATGACTTAATTAAAAGAACTTAGTTTT-GAATTATGTTTTTTCT 1602
Query 1536 TCAGGGTTTGGATTTCTAAAAACCTAATACACACATCTTTAATCTGTGTGTTCTCTCTGC 1595
|||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||| |
Sbjct 1603 TCAGGGTTGGGATTTCTAAAAACCTAATACACA--TCTTTAATCTGTGTGTT-T-TCT-C 1657
Query 1596 TGCTGCTTATCTAAACAAAACTGACATTGTCTTTTGTTCCTTTTAAGGG-ACGCACATCT 1654
|||| | |||||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 1658 TGCT--T-ATCTAAACAAAACTTACATTGTCTTTTGTTCCTCTTAAGGGGACGCACATCT 1714
Query 1655 GATAAAATAAAAACTCATGCTTTC 1678
||||||| ||||||||| ||||||
Sbjct 1715 GATAAAACAAAAACTCAGGCTTTC 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82931300340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5