BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477656
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03990.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1389 0.0
> AT3G03990.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:1033768-1034906 FORWARD LENGTH=1139
Length=1139
Score = 1389 bits (752), Expect = 0.0
Identities = 796/818 (97%), Gaps = 0/818 (0%)
Strand=Plus/Plus
Query 1 AAAAATGAGTCAACACAACATCTTAGATGCTCTAAATGTCCGGGTCGTGGGTACGGGTGA 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 17 AAAAATGAGTCAACACAACATCTTAGAAGCTCTAAATGTCCGGGTCGTGGGTACGGGTGA 76
Query 61 TCGGATCCTGTTTCTAGCCCATGGATTCGGTACTGACCAATCAGCTTGGCACTTAATCCT 120
||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 77 TCGGATCCTGTTTTTGGCCCATGGATTCGGTACTGACCAATCAGCTTGGCACTTGATCCT 136
Query 121 TCCTTACTTCACCCAAAACTACAGAGTCGTCCTCTATGACCTAGTTTGCGCCGGCAGTGT 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TCCTTACTTCACTCAAAACTACAGAGTCGTCCTCTATGACCTAGTTTGCGCCGGCAGTGT 196
Query 181 CAATCCCGATTACTTCGATTTCAATCGTTACACAACTCTCGATCCTTACGTCGATGATCT 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 CAACCCCGATTACTTCGATTTCAATCGTTACACAACTCTCGATCCTTACGTCGATGATCT 256
Query 241 CCTCGACATCGTCGATTCACTCGGAATCCAAAACTGTGCTTACGTTGGTCACTCTGTTTC 300
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TCTCAACATCGTTGATTCACTCGGAATCCAAAACTGTGCTTACGTTGGTCACTCTGTTTC 316
Query 301 CGCTATGATCGGAATCATCGCTTCGATTCGTCGGCCGGAGCTTTTCTCGAAGCTTATCTT 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 317 CGCTATGATCGGAATCATCGCTTCGATTCGTCGGCCGGAGCTTTTCTCCAAGCTTATCTT 376
Query 361 GATCGGATTTTCACCTAGGTTTCTCAACGACGAGGATTACCACGGAGGATTCGAAGAAGG 420
|||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 377 GATCGGATTTTCGCCTAGGTTTCTCAACGACGAGGATTATCATGGAGGATTCGAAGAAGG 436
Query 421 TGAGATCGAGAAGGTTTTCTCAGCTATGGAAGCTAATTACGAAGCTTGGGTTCATGGATT 480
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TGAGATTGAGAAAGTTTTCTCAGCTATGGAAGCTAATTACGAAGCTTGGGTTCATGGATT 496
Query 481 TGCTCCGCTTGCTGTTGGAGCTGATGTTCCGGCGGCGGTTAGAGAATTTAGCCGGACTTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TGCTCCGCTTGCTGTTGGAGCTGATGTTCCGGCGGCGGTTAGAGAATTTAGCCGGACTTT 556
Query 541 GTTTAATATGCGTCCGGATATTTCTCTGTTTGTTTCGAGGACGGTTTTCAACAGCGATCT 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 557 GTTTAATATGCGTCCGGATATATCTCTGTTTGTTTCGAGGACGGTTTTCAACAGCGATCT 616
Query 601 GAGAGGTGTGCTCGGGTTAGTTAGAGCTCCGACGTGTGTGATTCAGACGGCGAAGGATGT 660
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 617 GAGAGGTGTGCTTGGGTTAGTTAGAGTTCCGACGTGTGTGATTCAGACGGCGAAGGATGT 676
Query 661 TTCGGTGCCGGCTTCGGTGGCGGAGTATCTTAGGTCTCATCTCGGTGGAGATACTACTGT 720
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TTCTGTGCCGGCTTCGGTGGCGGAGTATCTTAGGTCTCATCTCGGTGGAGATACTACTGT 736
Query 721 GGAGACGCTTAAAACTGAAGGACATTTGCCGCATCTTAGTGCTCCGGCGCAGCTTGCTCA 780
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 737 GGAGACTCTTAAAACTGAAGGACATTTGCCGCAGCTTAGTGCTCCGGCGCAGCTTGCTCA 796
Query 781 GTTTCTCCGGCGAGCTCTTCCTCGGTGACTCTTTTTTA 818
|||||||||||||||||||||||||||||| |||||||
Sbjct 797 GTTTCTCCGGCGAGCTCTTCCTCGGTGACTTTTTTTTA 834
Score = 313 bits (169), Expect = 3e-84
Identities = 254/290 (88%), Gaps = 25/290 (9%)
Strand=Plus/Plus
Query 817 TAATTGGAGGAATATGGGATTAGTGGGGTCCACGTAGCGAAGAAAAGAAGGGCCTCTATT 876
||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 862 TAATTGGTGGAATATGGGTTTAGTGGGGTCCACGTATCGAAGAAAAGAAGGGCCTCTATT 921
Query 877 TGTGGAGTACAGTTTGGCATTGTCACAAATCTAGTAATAAGATAAGATTGTTCACATGAC 936
||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 922 TGTGGAGGACAGTTTGGCATTGTCACAAATCTAGTAA---GATAAGATTGTTCACTTGAC 978
Query 937 ACGTGACTATCGCATTTATATATCACTTCTTCACTTTCTCTTGCTCTCTTGATTAGTTTA 996
|||||||| |||| ||| | |||||||| || ||||| | |||||||| |||||||||
Sbjct 979 ACGTGACTTTCGCTTTT-T-TATCACTT-TT---TTTCT-T-GCTCTCTTCATTAGTTTA 1030
Query 997 ATTAATCACAAGTTTATTTTA-AAGAATAATTGGCAGAATAAC-AAACAA--CATTAAAA 1052
| |||||||||||||||| | || ||||||||| |||||||| ||| || ||||||||
Sbjct 1031 -T-AATCACAAGTTTATTTCATAA-AATAATTGG-AGAATAACCAAAAAAAACATTAAAA 1086
Query 1053 A-TC-T-T---ATCTTTTACTTTCCTCTGAATATTTCCATCCATATTGTT 1096
| || | | |||||||||||||||||||||||||| ||||||||||||
Sbjct 1087 AATCCTATCTTATCTTTTACTTTCCTCTGAATATTTCTATCCATATTGTT 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53714583150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5