BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477663
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04040.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 857 0.0
AT5G18250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 401 3e-111
> AT3G04040.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G18250.1);
Has 58 Blast hits to 58 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1047640-1049260
FORWARD LENGTH=765
Length=765
Score = 857 bits (464), Expect = 0.0
Identities = 589/644 (91%), Gaps = 30/644 (5%)
Strand=Plus/Plus
Query 21 TGTCTGCAACAATGGCGGATTCATGG-AAGGAGATCGGATCTAGATGCCATCACTGCGCA 79
||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||
Sbjct 116 TGTCTGCAACAATGGCGGATTCA-GGAAAGGAGATCGGATCCAGATGTCATCACTGCGCA 174
Query 80 GGCCCTCTTACGAAAAATCTGGAAACCAACGAATGGACTGTGGCTCCGTTCATCAGGGAT 139
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 175 GGCCCTCTTACGAAAAATCTGGAAACCAACGAATGGACTGTGGCTCCGTTTATCAGGGAT 234
Query 140 AGCTTCTCTATGATTGGATCAGCTGTAGGTGGTACTGCAAGTGCTTTCATTGGATTTAAC 199
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 235 AGCTTCTCTATGATTGGATCAGCTGTTGGTGGTACTGCAAGTGCTTTCATTGGGTTTCAC 294
Query 200 CATGTAATGCCGATTGTACGCAAGTGGATAAAAGGACCCATGTGGTTGCATTTTCTTGTT 259
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 295 CATGTAATGCCGATTGTACGCAAGTGGATCAAAGGACCCATGTGGTTGCATTTTCTTGTT 354
Query 260 GGTGCTCCACCTGTGATAGTTGTTTCATCAGCCTGTGCTGGACTTGCAGGTGGCGCTGTA 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GGTGCTCCACCTGTGATAGTTGTTTCATCAGCCTGTGCTGGACTTGCAGGTGGCGCTGTA 414
Query 320 CCGGCTTTGGCACAGCTTGCATCGTCGTCTTATCATGCGGCTGTACATTCATCTCAGCCA 379
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 415 CCGGCTTTAGCACAGCTTGCATCGTCGTCTTATCATGCGGCTGTTCATTCATCTCAGCCA 474
Query 380 CCGCAAGGGCAAGAGAAGAACAAATTGCACAAATCCTCTACCATTTCTCCTTCGTAGCT- 438
|| ||||||||||| |||||| |||||||||| ||||||||||||||||||| |||| |
Sbjct 475 CCACAAGGGCAAGATAAGAACCAATTGCACAATTCCTCTACCATTTCTCCTTTGTAGATG 534
Query 439 --ACACAGCTCTCTTCTGTTGCTCCTTCCATATGTGTTATGTGTATAAAGTTTCAACTTT 496
||||||||||||||| |||||| |||||| |||| || | || | |||||||||
Sbjct 535 TTACACAGCTCTCTTCTCTTGCTCTTTCCAT--GTGT-AT----A-AA-GATTCAACTTT 585
Query 497 GTTTCCTTAGGACAAAATGAGAGATCAAATTTGTCTGAAGATAAACTGATCCAGTTTTGA 556
|||||||| |||||||||||||||||||||| |||||||||| | | || ||||
Sbjct 586 GTTTCCTTTGGACAAAATGAGAGATCAAATT-GTCTGAAGAT---C----C-AGGTTTGC 636
Query 557 CACTTGACACTTTTGAGTGTATACAAAAAACTGAATGCAGAAACGTGATTAGA-AGCAGA 615
||||||||||||||||| |||||||||| || |||||||||||||||||||| | ||||
Sbjct 637 CACTTGACACTTTTGAGGGTATACAAAA--CTTAATGCAGAAACGTGATTAGACA-CAGA 693
Query 616 TTAAT-TAGTAGTTACGAATTCATTTTTAGTGCTAAACAAGCTT 658
||||| | ||| ||||||||||| |||||||||||||||||||
Sbjct 694 TTAATCT-GTA-TTACGAATTCAAATTTAGTGCTAAACAAGCTT 735
> AT5G18250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT3G04040.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:6033702-6035380 FORWARD LENGTH=661
Length=661
Score = 401 bits (217), Expect = 3e-111
Identities = 346/408 (85%), Gaps = 9/408 (2%)
Strand=Plus/Plus
Query 31 AATGGCGGATTCAT-GGAAGGAGATCG-GATCTAGATGCCATCACTGCGCAGGCCCTCTT 88
|||| ||||||| | || | || || | ||| |||||||||||||||||||||||||||
Sbjct 95 AATGACGGATTC-TGGGCATGATATTGAAATC-AGATGCCATCACTGCGCAGGCCCTCTT 152
Query 89 ACGAAAAATCTGGAAACCAACGAATGGACTGTGGCTCCGTTCATCAGGGATAGCTTCTCT 148
|| | |||| ||||||||| |||||||||| | ||||||||||||||||||||| |||
Sbjct 153 ACCAGAAATTTGGAAACCAGTAAATGGACTGTTGATCCGTTCATCAGGGATAGCTTTTCT 212
Query 149 ATGATTGGATCAGCTGTAGGTGGTACTGCAAGTGCTTTCATTGGATTTAACCATGTAATG 208
||||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||
Sbjct 213 ATGATTGGATCAGCTGTTGGAGGTACTGCAAGTGCATTCATTGGATTTAACCATGCAATG 272
Query 209 CCGATTGTACGCAAGTGGATAAAAGGACCCATGTGGTTGCATTTTCTTGTTGGTGCTCCA 268
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||| || |||
Sbjct 273 CCAATTGTACGCAAGTGGATCAAAGGACCCATGTGGTTACATTTTCTTGTTGGGGCACCA 332
Query 269 CCTGTGATAGTTGTTTCATCAGCCTGTGCTGGACTTGCAGGTGGCGCTGTACCGGCTTTG 328
||||| |||||| |||||||||| ||||||||||| ||||||||| |||||||||| ||
Sbjct 333 CCTGTTATAGTTCTTTCATCAGCATGTGCTGGACTAGCAGGTGGCACTGTACCGGCACTG 392
Query 329 GCACAGCTTGCATCGTCGTCTTATC-ATGCGGCTGTACATTCATCTCAGCCACCGCAAGG 387
|||||||| || || || || || | | || || || ||||| ||||||||||| ||||
Sbjct 393 GCACAGCTCGCTTCATCTTCATACCGA-GCTGCAGTCCATTCGTCTCAGCCACCACAAGC 451
Query 388 GCAAGAGAAGAACAAATTGCACAAATCCTCTACCATTTCTCCTTCGTA 435
||| || | |||||| |||| || || | || | |||||||| |||
Sbjct 452 ACAAAAGGATAACAAAATGCAGAAGTC-T--ACGACTTCTCCTTTGTA 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31798215051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5