BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg477669
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04090.1 | Symbols: SIP1;1, SIP1A | small and basic intrinsi... 1347 0.0
> AT3G04090.1 | Symbols: SIP1;1, SIP1A | small and basic intrinsic
protein 1A | chr3:1072092-1074160 REVERSE LENGTH=1100
Length=1100
Score = 1347 bits (729), Expect = 0.0
Identities = 883/951 (93%), Gaps = 36/951 (4%)
Strand=Plus/Plus
Query 1 GAGGAGAAAAATAGCTGT----GACAAAGCTAAAGAGGCGACGT-------ACCTAACCA 49
|||||||||||||||||| || ||||||||||||||||||| |||||||||
Sbjct 1 GAGGAGAAAAATAGCTGTGAGAGAGAAAGCTAAAGAGGCGACGTACCACCCACCTAACCA 60
Query 50 CAACCAGATCCCCAAAA-ACAGAGAAC-TTCTCGATACGAACGCC------------A-- 93
||||||||||||||||| ||||||||| ||||||||||||||||| |
Sbjct 61 CAACCAGATCCCCAAAAGACAGAGAACTTTCTCGATACGAACGCCAAAGAGAAGAAGACG 120
Query 94 AAGA-GAAGATGATGGGTGTGGTGAAGTCGGCGATTGGGGATATGTTGATGACCTTCTCT 152
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGACGAAGATGATGGGTGTGTTGAAGTCGGCGATTGGGGATATGTTGATGACCTTCTCT 180
Query 153 TGGGTTGTCCTCTCCGCGACCTTTGGAATTCAGACGGCGGCGATTATCTCCGCCGGCGAT 212
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 181 TGGGTTGTCCTCTCCGCTACCTTTGGAATTCAGACGGCGGCGATTATCTCCGCCGGTGAT 240
Query 213 TTTCAGGGAATCACTTGGGCTCCGTTGGTGATCTTGACGTCGTTGATTTTCGTCTACGTC 272
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 TTTCAGGCAATCACTTGGGCTCCGTTGGTGATTTTGACGTCGTTGATTTTCGTCTACGTC 300
Query 273 TCGATCTTCACCGTTATCTTCGGTAGCGCTAGCTTCAATCCTACCGGAAACGCCGCCTTT 332
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 301 TCGATCTTCACCGTTATCTTCGGTAGCGCTAGCTTCAATCCTACCGGAAGCGCTGCCTTT 360
Query 333 TATGTCGCCGGTATCCCCGGAGATACTCTTTTCTCCTTGGCGATTAGATTACCTGCTCAG 392
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TATGTCGCCGGTGTCCCCGGAGATACTCTTTTCTCCTTGGCGATTAGATTACCTGCTCAG 420
Query 393 GCAGCTGGTGCGGCAGGAGGTGCATTGGCCATCATGGAGTTCATACCAGAGAAATACAAG 452
||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GCAATTGGTGCTGCAGGAGGTGCATTGGCGATCATGGAGTTCATACCAGAGAAATACAAG 480
Query 453 CATATGATTGGAGGACCTTCTCTTCAGGTTGATGTGCACACTGGAGCTATTGCAGAAACG 512
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 CATATGATTGGAGGTCCTTCTCTTCAGGTTGATGTGCACACTGGAGCTATTGCTGAAACG 540
Query 513 ATCTTAAGTTTTGGTATTACCTTTGCGGTTTTGCTAATTATCCTCCGTGGTCCACGGAGA 572
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 541 ATCTTAAGTTTTGGTATTACCTTTGCGGTTTTGCTAATTATCCTCAGGGGTCCACGGAGA 600
Query 573 TTGCTTGCTAAGACGTTCTTGCTTGCTCTTGCAACCATCTCATTTGTTGTCGCCGGGTCT 632
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 TTGCTTGCTAAGACGTTCTTGCTTGCTCTTGCAACCATCTCATTTGTTGTCGCCGGATCT 660
Query 633 AAATACACTGGACCAGCCATGAATCCTGCCATTGCATTTGGGTGGGCATACATGTACAGC 692
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 661 AAATACACTGGACCAGCCATGAATCCTGCCATTGCGTTTGGATGGGCATACATGTACAGC 720
Query 693 TCCCACAACACATGGGACCATATCTACGTCTACTGGATCAGTTCTTTCGTAGGAGCATTA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCCCACAACACATGGGACCATATCTACGTCTACTGGATCAGTTCTTTCGTAGGAGCATTA 780
Query 753 TCTGCTGCGTTGCTCTTCCGTTCCATCTTCCCTCCACCTCGGCCCCAGAAGAAGAAACAA 812
|||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 781 TCTGCTGCATTGCTTTTCCGTTCTATCTTCCCGCCACCTCGGCCCCAGAAGAAGAAACAA 840
Query 813 AAGAAAGCCTGAGGAAAAC----CAGTTGGGAGAACACCGGTCAGATTCTTCACCGGTTT 868
|||||||||||||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct 841 AAGAAAGCCTGAGGAAAATAAAACAATTGGGAGAATACCGGTCAGATTCTTCACCGGTTT 900
Query 869 GGGCTGTAGAAAGAAAGATTAAGAAAATTGTTCCATTCTTAAATAAGGAGA 919
|||||||||||||| || | ||| ||||||||||| |||||||||||
Sbjct 901 GGGCTGTAGAAAGA----TTCACAAAGCTGTTCCATTCTAAAATAAGGAGA 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5